CB293468

Overview
NameCB293468
Unique NameCB293468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293468_ssr811 microsatellite CB293468_ssr811:811..825. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12851 contig Csv1_Contig12851:3..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 3.280e-77
Identity = 142/174 (81.61%), Postives = 154/174 (88.51%), Query Frame = -2
Query:  288 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTA 809
            MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA++  ++A
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.628e-76
Identity = 141/175 (80.57%), Postives = 154/175 (88.00%), Query Frame = -2
Query:  285 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTAT 809
            MVKYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA++  + A+
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.426e-72
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            MVKYS +P NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.078e-72
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = -2
Query:  300 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 809
            MVKYS+EP NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS          +  +A+RK
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.059e-71
Identity = 132/170 (77.65%), Postives = 143/170 (84.12%), Query Frame = -2
Query:  300 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 809
            MVKYS++P NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS          +  +A RK
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.097e-56
Identity = 110/152 (72.37%), Postives = 126/152 (82.89%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            M KYS +P+NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 2.287e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 2.287e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.987e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CB293468 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.987e-54
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = -2
Query:  354 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 809
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of CB293468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL172_ARATH3.280e-7781.6160S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH1.628e-7680.5760S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU1.426e-7286.8460S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE7.078e-7279.4160S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL172_HORVU2.059e-7177.6560S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA1.097e-5672.3760S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_HUMAN2.287e-5467.7660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA2.287e-5467.7660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT2.987e-5467.7660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE2.987e-5467.7660S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293468 ID=CB293468; Name=CB293468; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTAGAACACAATAGAACATGAAGTAAATCAATCGTTTGGCC
AAACAAGCATTGTTGCGGCAAAGTCAACCTCACCATAACCACCATCAAAA
TTCCACTGAGAACTATCATGGTAAGCGAGCCATGGCAAGACAGAATAAAA
CTAAATACTGAACCAACAGAAGTCTTCAGGAACAAGTATCTTGTAAACAA
AATTGTATGTTGTCATGGTAGTACAAAGGGGGAAAAAAGAGAAATCAAGT
CAGGACTCCCAACATTCAAGATAAGGCACCACTATGTAGCTGTCCTCGGT
TTCCTGGAAGCCAACTGGGTCTCCGGCTCTTTCTTCACAGGTTCCTCCTT
TTCTGAGAGTGTCAACTCAATATGACATGGGGAAGACATGTATGGGTTAA
TCCTTCCATGTGCACGATAAGTCCGACGCCTCTGCTTCTGGGCTTGATTC
ACTTGGATGTGAGAAATGTAAAGCGCGTCCACATCTAAGCCTTTCACCTC
TGCATTACTCTCAGCATTCTTGAGTAAATCCAGAATGAACTTTGCAGATT
TAACCGGCCAGCGACCTTGACCATTTGGATTACGGTTTTTAGCCTGTGCA
GTTCGCCCAACACCGCGACAGAAGCGGGTGAATGGTATGGCTTGCTTGTG
AGCCATAACATCCTCCAAGTACCTTTTAGCCTTGGTCAAAGACAGCTTTC
TAAGAGCATGGGCTGCCTCCCTAGTGTTCTTGAAGTGAACACGGAGATCA
GAGCCTCTAGCTTTGCATGACTTGGTGGGATTGTCCGGCTCTTTCGAATA
CTTCACCATGGCTGCTGCTGCTGCTCTTCTCAGCGTTGCGTTTTTCAGCC
AATTGAGCCTCGTG
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