CB293498

Overview
NameCB293498
Unique NameCB293498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13740 contig Csv1_Contig13740:124..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.125e-52
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = -3
Query:  112 TVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 474
            +VRSSLE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+T+WCGPCKVIAP ++EL+QKY DV+FLKLDCNQ+NKSLAKELGI+VVPTFKILKDNK+VKEVTGAK +DLV AID VRSS
Sbjct:   60 SVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAIDTVRSS 182          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52
Identity = 98/123 (79.67%), Postives = 109/123 (88.62%), Query Frame = -3
Query:  115 GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRS 483
            G   VR SLE    TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQWCGPCKVIAPK++EL++KY D++FLKLDCNQ+NK LAKELGIRVVPTFKILKDNKVVKEVTGAK EDL+ AI+A RS
Sbjct:   62 GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAARS 184          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.388e-49
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = -3
Query:  112 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 486
            G    VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN +N+ LAKELGIRVVPTFKILKDNKVVKEVTGAK +DLV AI+  RS+
Sbjct:   51 GDSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.857e-49
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -3
Query:  112 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 486
            G    VR SL+    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN EN+ LAKELGIRVVPTFKILKDN+VVKEVTGAK +DLV AI+  RS+
Sbjct:   54 GDSSVVRCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSA 178          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.428e-47
Identity = 96/139 (69.06%), Postives = 114/139 (82.01%), Query Frame = -3
Query:  112 KKSNKQLNGGVFTVRSSLEIAGAT------VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 510
            +K  +++ GG   VR+S+E A  T      VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQWCGPCK +APK+++LA++Y DVIFLKLDCNQENK+LAKELGIRVVPTFKILK+N VV EVTGAK + L+ AI A RSS
Sbjct:   54 RKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARSS 190          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 94/133 (70.68%), Postives = 108/133 (81.20%), Query Frame = -3
Query:  112 QLNGGVFTVRSSLEIA-GAT----VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 495
            +++G    V++SLE A GA     VG+VTEV+KDTFWPI   AGDK VVLDMYTQWCGPCKV+APK+QELA+K  DV+FLKLDCNQENK LAKELGIRVVPTFKILK  K+V EVTGAK + LV AI+A RSS
Sbjct:   59 RMSGRSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIEAARSS 191          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.448e-16
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = -3
Query:  127 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 417
            +KD F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  127 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 417
            +K  F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+VIFL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = -3
Query:  127 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 417
            +K  F  ++ +AGDK VV+D    WCGPCK+I P F  L++K+++V+F+++D + + K +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVD-DCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = -3
Query:  130 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 417
            +K+ F   + AAGDK VV+D    WCGPCK+I P F  L  KYS+V+FL++D + + + +A +  ++ +PTF+  K  + V E +GA  E L  +I
Sbjct:    7 SKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD-DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASI 101          
The following BLAST results are available for this feature:
BLAST of CB293498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRXF_PEA1.125e-5282.11Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRXF2_ARATH5.584e-5279.67Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXF1_ARATH3.388e-4974.40Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXF_BRANA9.857e-4973.60Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TRXF_SPIOL2.428e-4769.06Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_MESCR1.332e-4570.68Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CALJA6.448e-1642.27Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN3.200e-1542.27Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_RABIT1.216e-1438.14Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_MOUSE1.588e-1440.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ag09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ag09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293498 ID=CB293498; Name=CB293498; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTTTTTTTTTACTACAGTGGAACAATCAATTATTCCCTAGCAC
GTACACATTGTTGATCATATTGTTTATAGTTTACAGGAGAAATAATAGGA
AAGAATTTTCAACTGGATCTAACAGCATCAATGGCGAAAACTAGGTCTTC
CAATTTGGCCCCCGTCACTTCCTTTACAACCTTATTGTCTTTCAGAATCT
TGAAAGTAGGAACAACCCTTATTCCAAGCTCTTTCGCCAATGACTTGTTC
TCTTGGTTGCAATCAAGCTTTAGAAATATAACATCGGAGTACTTTTGGGC
CAATTCTTGAAATTTTGGAGCTATCACTTTACAAGGACCACACCATTGAG
TGTACATATCAAGAACAACAGTCTTATCACCGGCGGCCTTAACGATGGGC
CAAAAAGTATCCTTATTTACTTCAGTGACCTCTCCCACTGTGGCCCCCGC
AATCTCCAAGCTCGATCTCACCGTGAAAACACCGCCGTTTAGCTGCTTAT
TGCTCTTCTTATTCGCCTTCTTCGCTACTAATGACGAGGAGTAAGAGCCG
GTTCTTGAGCTTGAGACTCCCGCTGAGAAAGCAGAGGCTGTGCCTCGTG
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