CB293552

Overview
NameCB293552
Unique NameCB293552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293552 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.491e-36
Identity = 92/180 (51.11%), Postives = 106/180 (58.89%), Query Frame = -1 
Query:  313 NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHD---GPQSYVTGIPVPPINPSRG-SDLFPGPGAGMYPRRGGFGGDGSML----XXXXXXXXXXXXXXXXXXXXXXXXXXXGARFDPYGPPGIPGFEPNRFVRN-PRGPDRTHPDLEFRPGGSDFI 825
            N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPPI  + G SDLFPGPGAGMYP RGGF GDGSML                               GARFDPYGPPG+PGFEP RF R  PRGP   HPDLE  PGGSDFI
Sbjct:  125 NEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFFPFGDGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPGGSDFI 302
The following BLAST results are available for this feature:
BLAST of CB293552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH3.491e-3651.11Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293552 ID=CB293552; Name=CB293552; organism=Citrus sinensis; type=EST; length=831bp
TTTTTTTTTTTTTTTTAATCATAAGACCGTGTATGCTAAGTTGTATTAGA
TGGTAAATGCATTTACAGTCCTTGTACAGTCGTATGGTAACAAACTTTAA
ATAGCTATTTTTTGAGTTTACTACTTGGCATTTGGTCGGCAAAATACCTA
CCCGTCCATACAGAAACACCAAGAAACCAGAGTATACAAAATGCTATAAC
TCAAGCCACAATATAAACTGAAGATCTACACGGCTGGAATGAAATTCCCA
GCCAAAACAGACAAGAACGAAAACAATTGAATGTGGATCAAACGCGTCCA
GGAAGTCTCTTAGATAAAATCAGAACCACCCGGGCGAAACTCCAGGTCTG
GATGAGTCCGATCAGGCCCTCGTGGGTTTCTGACAAAACGATTAGGTTCA
AATCCAGGAATTCCAGGCGGGCCGTAGGGATCAAAACGAGCACCTGGAGG
AACAGGCGGGTTCCCTCCAGGAAAACTAGGGTCTCCACCAATTCCACCAA
AAAAGCCAGGATGATCAGGTCCTATTAGCATGCTCCCATCACCGCCAAAG
CCACCCCTTCTAGGATACATTCCAGCACCAGGGCCAGGAAAAAGATCGCT
ACCACGACTTGGGTTGATAGGAGGAACAGGAATTCCTGTAACATAAGATT
GAGGCCCGTCATGCTCAAATCCAAAAGCAGGATCGGTTACAATAGGCCTT
GATCCTTCACATCTTTCTGAGCTAGCTGTTTTTGGGGAGCCGTATAATTT
TGAAATAATGTCTTTATCAAGATCTGTCACAAGCTTCTCTAAATTCTTGA
ACTTATCAGAGTAATTGCCTCCATTTTCTGC
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