CB293612

Overview
NameCB293612
Unique NameCB293612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.773e-27
Identity = 83/252 (32.94%), Postives = 122/252 (48.41%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYFNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVSRKECLWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXXILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLSKLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSLL 817
            +K+CF+YCAVFPKD  M+KE+LI+LWMA G+  +K + E+E +G+E +  L  RSFFQEIE  +    F   KMHD++HD A  +                  N+    +R                 ++ H    + +I                LP L  K   LR L +G             +  ++P ++G L+HL+YLNL    +  LP+ LC+L NLQ LD++ C  L  LP    KL ++R+LL
Sbjct:  403 LKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF---KMHDLIHDLATSLFS---------------ANTSSSNIRE----------------INKHSYTHMMSI------GFAEVVFFYTLPPL-EKFISLRVLNLG-----------DSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLL 602          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.434e-26
Identity = 86/256 (33.59%), Postives = 122/256 (47.66%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYFNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFV---SRKECLWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXXILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLS-KLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSLL 817
            +++CF YCAVFPKD  M KE LI  WMA G+  +K + E+E +G E +N L  RSFFQEIE +     F   KMHD++HD A  +   +       EI+ N +  + S G                 A +  S                           P L  K   LR  V+ +R S         ++ ++P ++G L+HL+YL+LS    I  LP+ LC+L NLQ LD+  C +L  LP    KL ++R+LL
Sbjct:  402 LRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF---KMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIG----------------FAEVVSSYS-------------------------PSLLQKFVSLR--VLNLRNS---------NLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLL 602          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 85/259 (32.82%), Postives = 130/259 (50.19%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYFNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHD-----FAQFVSRKECLWLEIDGNKES--VINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXXILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLSKLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSLL 817
            +++CF+YCAVFPKD  ++KE LI LWMA  +  +K + E+E +G E +N L  RSFFQEIE       F   KMHD++HD     F+   S +    + +  +++   ++ ++ D                    MSI G + +  +  Y              P LF +   LR L +    +S F         ++P +VG L+HL+YL+LS   I  LP+ LC+L NLQ LD+  C +L  LP    KL ++R+L+
Sbjct:  402 LRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF---KMHDLIHDLATSMFSASASSRSIRQINVKDDEDMMFIVTNYKDM-------------------MSI-GFSEV--VSSYS-------------PSLFKRFVSLRVLNL---SNSEFE--------QLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLV 611          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 87/254 (34.25%), Postives = 124/254 (48.82%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGY-FNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVSRKECLWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXX--ILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLSKLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSL 814
            +KRCF+ C++FPK +  D+EEL+ LWMA    +  +  + +E IG +Y   L  +SFFQ +     D       MHD+++D A+ VS   C  LE D      I       RH            A    SI G   LRTIL ++             +L  L + L+GLR L +        SH   Y IT +P+++  L  L+YL+LS   I+ LPE +C L NLQ L +  C +L  LP  I +L+N+R L
Sbjct:  418 LKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRL-----DITMTSFVMHDLMNDLAKAVSGDFCFRLEDDN-----IPEIPSTTRHFSFSRSQCDASVAF--RSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSL--------SH---YQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLL 648          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.938e-23
Identity = 78/258 (30.23%), Postives = 129/258 (50.00%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYF-NAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVSRKECLWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXXILPGLFSK-----LAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLI-HLKYLNLSKLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSL 814
            +KRCF+YC++FPK ++ +K++++ LWMA+G+    +  + +E +G EYF+ L +RS  Q+ +         R  MHD +++ AQF S +     E DG K  V     ++ R+               PM    L  ++ +  +             L  + S+     L  LR L +        SH   Y I  +P +  K I H ++L+LS+  +E+LP++LC +YNLQ L +  C +L+ELP  I  L+N+R L
Sbjct:  426 LKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK--------TRYIMHDFINELAQFASGEFSSKFE-DGCKLQV----SERTRYLSYLRDNYAE-----PMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSL--------SH---YKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYL 654          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.132e-18
Identity = 80/258 (31.01%), Postives = 117/258 (45.35%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYFNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQ--FVSRKEC---LWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTI-LIYDKXXXXXXXXXXILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLSK-LCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSL 814
            +++CF+YCAVFPKD  M KE LITLWMA G+  +K + E+E +G E +N L  RSFFQEIE    +  F   K+HD++HD A   F +   C     + +   K +V   F   V                 P  +     LR + L Y K           LP     L  LR L +              +   +PE + KL +L+ L++     +  LP+   +L +L+ L + GC  L   P  IG L  +++L
Sbjct:  404 LRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYF---KIHDLIHDLATSLFSASASCGNIREINVKDYKHTVSIGFAAVVSSYS-------------PSLLKKFVSLRVLNLSYSKLEQ--------LPSSIGDLLHLRYLDLSCN-----------NFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTL 625          
BLAST of CB293612 vs. ExPASy Swiss-Prot
Match: R13L2_ARATH (Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 63/251 (25.10%), Postives = 105/251 (41.83%), Query Frame = 2
Query:   62 VKRCFSYCAVFPKDYSMDKEELITLWMAQGYFNAKEDQEMEMIGEEYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVSRKECLWLEIDGNKESVINSFGDKVRHXXXXXXXXXXXXAPLPMSIHGLNRLRTILIYDKXXXXXXXXXXILPGLFSKLAGLRALVIGIRQSSPFSHPYQYSITEIPENVGKLIHLKYLNLSKLCIERLPETLCELYNLQELDIRGCVNLRELPAGIGKLMNMRSL 814
            +K CF Y +VFP+DY +D E+LI L +A+G+    E+  ME +   Y   L   S  + +++ +     M  ++HD+V +F      KE  ++ +   + S   S  + V H                 S     + R  + Y +          +L      L GL  +  G            YS   +P+ +G L+HL+YL ++   +  LP+ +  L  LQ LD  G  N  E    +  L ++R L
Sbjct:  410 LKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKK--GKLMSFRIHDLVREFT-IKKSKELNFVNVYDEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVL-----NLGGLHFICQG------------YSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASG--NSFERMTDLSNLTSLRHL 638          
The following BLAST results are available for this feature:
BLAST of CB293612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RGA2_SOLBU3.773e-2732.94Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA1_SOLBU1.434e-2633.59Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA3_SOLBU2.445e-2632.82Putative disease resistance protein RGA3 OS=Solanu... [more]
DRL21_ARATH1.214e-2534.25Putative disease resistance protein At3g14460 OS=A... [more]
R13L1_ARATH1.938e-2330.23Putative disease resistance RPP13-like protein 1 O... [more]
RGA4_SOLBU7.132e-1831.01Putative disease resistance protein RGA4 OS=Solanu... [more]
R13L2_ARATH6.248e-1425.10Putative disease resistance RPP13-like protein 2 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293612 ID=CB293612; Name=CB293612; organism=Citrus sinensis; type=EST; length=820bp
CCCTTAGGGTCTTTTGGCTCCTTTGTTGTTGAGTTATAACCCTTTGCCCT
CCAATTCTATGGTAAAACGGTGCTTCTCATATTGTGCTGTCTTTCCAAAA
GACTACAGTATGGATAAAGAAGAATTGATTACTCTGTGGATGGCTCAAGG
TTACTTTAACGCAAAAGAAGACCAAGAAATGGAGATGATTGGAGAAGAGT
ATTTCAACATCTTGGCAACACGCTCTTTCTTTCAAGAGATTGAAAAAGAT
GAGGATGATGATGATTTTATGAGGTGTAAGATGCATGACATAGTACATGA
TTTTGCCCAATTTGTAAGTAGAAAAGAATGTTTGTGGCTAGAAATTGATG
GTAACAAAGAATCAGTCATAAATTCTTTTGGTGACAAAGTCCGTCACCTA
GGATTAAATTTAGGATTCAATTTTAAAGGAGGCGCTCCACTTCCTATGTC
CATTCATGGACTTAATAGATTGCGGACCATCTTAATTTATGATAAAAGTC
CTTACTCTTCGTCTCTTCATAGTAGCATCCTTCCAGGGTTATTTAGTAAA
TTGGCGGGTTTAAGGGCATTAGTTATAGGGATAAGGCAATCGTCCCCATT
TTCTCATCCTTACCAATATTCGATTACAGAAATTCCAGAAAATGTTGGAA
AATTGATACATTTAAAATATCTTAATTTGTCTAAATTATGTATAGAGAGA
CTGCCTGAGACTTTGTGTGAATTATATAATTTACAAGAGCTAGATATTAG
GGGTTGCGTAAATCTTAGAGAATTGCCTGCGGGGATTGGGAAATTAATGA
ACATGAGGAGTTTACTGAAT
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