CB293648
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 Query: 542 LQPATVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 L AT GQ+PG A+P + NM P ++Q GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++A Sbjct: 169 LPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVA 238
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 554 TVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 T GQ+PG +P M NM P + Q GA P+MP+Q MTQQATRHARRVYVGGLP ANEQ++A Sbjct: 191 TAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVA 256
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.285e-15 Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 2 Query: 551 ATVVIGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQATRHARRVYVGGLPP ANEQ+++ Sbjct: 203 AVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVS 272
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14 Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = 2 Query: 548 PATVVIGQLPGVPS-------AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 PA V+ Q P +P+ A+P M NMLP G Q + P Q MTQQATRHARRVYVGGLPP ANEQ++A Sbjct: 158 PAQAVVPQFPAIPTPSQFPGTAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVA 231
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13 Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 2 Query: 548 PATVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 P QLPG S++P M NMLPF Q+ + P Q MTQQATRHARRVYVGGLPP ANEQ++A Sbjct: 160 PTIPTPSQLPG--SSIPGMFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVA 224
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12 Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 2 Query: 542 LQPATVVIGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751 L V GQ+P P +P M NM P Q G +MP+Q MTQQATRHARRVYVGGL P ANEQ++A Sbjct: 184 LAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVA 256 The following BLAST results are available for this feature:
BLAST of CB293648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293648 ID=CB293648; Name=CB293648; organism=Citrus sinensis; type=EST; length=753bpback to top |