CB293648

Overview
NameCB293648
Unique NameCB293648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  542 LQPATVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            L  AT   GQ+PG   A+P +  NM P  ++Q GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++A
Sbjct:  169 LPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVA 238          
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  554 TVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            T   GQ+PG    +P M  NM P  + Q GA P+MP+Q MTQQATRHARRVYVGGLP  ANEQ++A
Sbjct:  191 TAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVA 256          
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.285e-15
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  551 ATVVIGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            A    GQ+P VP+   +P M  NM P     QLGA P++PVQ MTQQATRHARRVYVGGLPP ANEQ+++
Sbjct:  203 AVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVS 272          
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  548 PATVVIGQLPGVPS-------AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            PA  V+ Q P +P+       A+P M  NMLP G  Q     + P Q MTQQATRHARRVYVGGLPP ANEQ++A
Sbjct:  158 PAQAVVPQFPAIPTPSQFPGTAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVA 231          
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  548 PATVVIGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            P      QLPG  S++P M  NMLPF   Q+    + P Q MTQQATRHARRVYVGGLPP ANEQ++A
Sbjct:  160 PTIPTPSQLPG--SSIPGMFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVA 224          
BLAST of CB293648 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  542 LQPATVVIGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 751
            L     V GQ+P  P  +P   M  NM P    Q  G   +MP+Q MTQQATRHARRVYVGGL P ANEQ++A
Sbjct:  184 LAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVA 256          
The following BLAST results are available for this feature:
BLAST of CB293648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U2A2A_NICPL7.282e-1962.86Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL1.518e-1660.61Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ARATH1.285e-1560.00Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_ORYSJ4.135e-1454.67Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2B_WHEAT5.971e-1358.82Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2A_ARATH2.269e-1253.42Splicing factor U2af large subunit A OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06bg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293648 ID=CB293648; Name=CB293648; organism=Citrus sinensis; type=EST; length=753bp
GCACGATGCTCTGTTAAAAATTAGGGTTCGTAATTCAAGGTTGCAATGTC
TGGCAGAGATATTAGATACGACGCTGTTGGCGAAGGGTCGCGTCACAAGA
GTTCATGGGTATCTGGAAGGTCCAGGACTGGAGAGCGAGGGCGAGATAGG
CATCACAGAGACTTTAAAAGTGGGGGGGATGACAGAAGAAGGGACAAAAA
TTATAAATATGACCGCGAAGGGATTCGTGATCATGACAGGACAGACAGGC
ACCGTGACTATAATCGAGACAAAGAAAGGAGGCATAGACATAGATCACGT
TCCCATTCAAGTGACAGATTCAGGAACCGATCTAAATCACTCTCTCCTTC
CCGTTCTCCCTCGAAAAGCAAGCGGAGAAGTGGCTTTGATATGGCGCCAC
CTGCTGCAGCCATGCTACCTGGTGCTGCTGTTCCAGGCAATGTTTGGGCT
ACATGTTCCACTGTGCTACCCATGGATGTGATTTCCGTTGATTTAATGTC
CAATGGAGAGCTAGTGCTTCGATTGGCTGGATCTTGTTCGCCTTCAACCG
GCAACAGTTGTCATTGGGCAATTGCCTGGTGTACCTTCAGCAGTTCCAGA
AATGGCACAAAACATGTTACCTTTTGGAGCGACACAGTTGGGCGCTTTTC
CATTGATGCCGGTACAAGTCATGACTCAACAGGCCACGAGGCATGCTCGC
CGAGTATATGTTGGTGGGCTTCCTCCTTTGGCTAATGAACAGGCAATTGC
TAC
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