CB293712

Overview
NameCB293712
Unique NameCB293712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:588..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.871e-53
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSF++ENK+LIG
Sbjct:  168 VFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.750e-53
Identity = 94/101 (93.07%), Postives = 100/101 (99.01%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRT++DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSFL+ENK+LIG
Sbjct:  165 VFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.750e-53
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSFL+ENK+LIG
Sbjct:  158 VFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 258
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.396e-53
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSF++ENK+LIG
Sbjct:  168 VFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.425e-52
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSFL+ENK+LIG
Sbjct:  136 VFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 236
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.425e-52
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSFL+ENK+LIG
Sbjct:  172 VFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.057e-51
Identity = 90/101 (89.11%), Postives = 98/101 (97.03%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP NLEVP+YSFL+ENK+L+G
Sbjct:  173 VFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLVG 273
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.640e-40
Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIR RT  +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F D +K+++G
Sbjct:  116 VFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 215
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIRKGPAP NLE+P Y F +E K++IG
Sbjct:  131 VFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPLYEFPEEGKLVIG 231
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.359e-39
Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIR+GPAP NL +P+Y+F + +K++IG
Sbjct:  129 VFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTF-EGSKIIIG 228
The following BLAST results are available for this feature:
BLAST of CB293712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI3_TOBAC2.871e-5393.07Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI_SOLTU3.750e-5393.07Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI1_TOBAC3.750e-5393.07Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI5_TOBAC6.396e-5392.08Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI4_TOBAC1.425e-5292.08Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI2_TOBAC1.425e-5292.08Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI_MAIZE2.057e-5189.11Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST3.640e-4068.32Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR4.754e-4069.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO2.359e-3968.32Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293712 ID=CB293712; Name=CB293712; organism=Citrus sinensis; type=EST; length=790bp
AGGCCACAGGACCCCAGCTGATATGAATATGAATCAGTTACACCGGTTTC
ATGCAAAGCTGCAGCAGCACATCTATGTTATTGAGAGAAGAGAAAAAACG
GATAAGAAGCTTTCCCTTCGCCTCTTATAAAAGGGATTGTAGAAAGAAAT
CAAAGATACAGCAAGGAGCAATCGGAGCCGATCACCATTCTGTAGATGAA
CATACCCATAATAAAGAGAGCCGGAGAGCCCTCTGCATCACTATTGGTTG
AAAAAGTTTAAGCACTGCTAAAAAAGTAGTAAAACAAAAACAATGAAAAT
TTAGGTTAAAAGACAATGTGTCAAAACCAGGCAACTTATTCTGAGTTACA
GTATCCCAACCCCAATGAAAGGGTGGCAAGACACCAAGATAGACATTTAT
CTTCGACATTATCTGATAAAATATTAAAAAAAAAAGTGAGATCCCAAATA
ACCATGGATCACCGGGACAGGACGGCACACTTATCAACCAATGAGCATCT
TGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAAATTGGATGGGGCT
GGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAGAACCATGGCAAGG
GCAAAACCATCCACCAAAATCACCAGCATTTGGCAAAGGAATGCAACCAA
GATGTGTGCAGACCCCAACAACTACAAGCCACTCTGGGTTTTTAACCCTC
TCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAATCAACACTGTTGGC
CAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAAACT
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