CB293721

Overview
NameCB293721
Unique NameCB293721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA4_ARATH (Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.420e-70
Identity = 138/239 (57.74%), Postives = 176/239 (73.64%), Query Frame = -2
Query:   43 AFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXGSLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRS--LPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 753
            A ESRG HI    +    +  E++E +E+E   GE  + K+KSLPL TLI+ILKQQTG D+I+VGKIRP+LFD FG+D++PKVKKFMKV+L KL+                 LA  FL+ KL  +DE Y KPA++T VGSK++VYAGGS+ S  LPD GIL+SGCQTDQTSADA+P+GK +EAYGA+SN+IQ I+ E+DG ++NRE+V   R+ LKKQGFTQQPGLYCHD + + PFIC
Sbjct:  186 AIESRGFHIGGNKKDEDEA--EEIETKEIELEDGETIHAKDKSLPLQTLIDILKQQTGNDNIEVGKIRPSLFDAFGDDSSPKVKKFMKVILGKLQAGNGEEGGLMGMLG--KLASGFLEGKL--NDEDYVKPAMQTHVGSKEEVYAGGSRGSVPLPDSGILISGCQTDQTSADATPAGKPTEAYGAMSNSIQTILEETDGEISNREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418          
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA5_ARATH (Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.017e-68
Identity = 137/237 (57.81%), Postives = 173/237 (73.00%), Query Frame = -2
Query:   43 AFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXGSLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 753
            A ES+GI IP    HH+   DE+ + +E++   G   +  NKSLPL TLI+ILKQ TG +DI+VGKIRPTLF++FGEDA+PKVKKFMKV+L KL++                LAQEFLKHKL + DE Y KPA++T VG+K++VYAG S  SL D GIL+SGCQTDQTSADASP G    AYGA +NA+QII+ E+ G +T +ELVL  R++LKKQGF+Q+PGLYC D+ V+ PFIC
Sbjct:  183 ALESKGIAIP----HHKDEKDEN-KTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNVFGEDASPKVKKFMKVILTKLQEGKTEGGILGMIG---KLAQEFLKHKLND-DEEYVKPAMKTHVGNKQEVYAGASNGSLADNGILISGCQTDQTSADASPQGHPEMAYGAFTNAVQIILEETKGMITYKELVLKARKLLKKQGFSQRPGLYCSDSFVNAPFIC 410          
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA6_ARATH (Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 119/231 (51.52%), Postives = 156/231 (67.53%), Query Frame = -2
Query:   43 IPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXG--SLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 729
            I    +  + SGD    ++E EA   E G   N+SLPL TLI++LKQ+TG DDI+VGKIR TLFDMFG+D++PKVKKFM V+L+ L++                 +LAQEFL+ KL +      KPA++       DVYAG    +LPD GIL+SGCQTDQTS+DASP G    AYGAL+NAIQIII E+ G ++N++LVL  R++L+KQGF Q+PGLYC+D +V+  FIC
Sbjct:  152 IGESTKKKKDSGDSSTINKETEAEIIEVG---NRSLPLETLIDMLKQETGNDDIEVGKIRTTLFDMFGDDSSPKVKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFLEQKLSDD----VKPAIQ-------DVYAGAINGALPDNGILISGCQTDQTSSDASPPGHPELAYGALTNAIQIIIGETKGKISNKDLVLKARKLLRKQGFDQRPGLYCNDAYVNARFIC 368          
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA7_ARATH (Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.516e-51
Identity = 114/232 (49.14%), Postives = 153/232 (65.95%), Query Frame = -2
Query:   43 GDEDVEDRE-VEAGYGEGGYHKNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXGSLAQEFLKHKLEES----------DESYAKPALETEVGSKKDVYAGGSKRSL-PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESD--GAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 696
            G   VE RE VE G G+    +++ LPL   IE+LKQQTG+D+I++GKIRPTLFD+FGED++PK+KKFMKV+L KL++                  Q  L  K+EES          DE Y KPA++ +V S +++Y G S   L PD GIL+SGCQTD+TSAD    G   EA+GA SNAIQ++++E+D    +TN+E+VL  R++LKKQ F Q+PGLYC+D  V+ PFIC
Sbjct:  191 GSSHVETREIVEVGEGDEVV-RSRYLPLERFIELLKQQTGQDNIEIGKIRPTLFDVFGEDSSPKIKKFMKVILTKLRKTND---------------QSTLLGKIEESARGYIEETLNDEHYMKPAMQAQVKSDREIYGGRSSNGLFPDRGILLSGCQTDETSADVKKKG---EAFGAFSNAIQMVLSETDHKDKITNKEMVLRAREILKKQMFIQRPGLYCNDRFVNAPFIC 403          
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA8_ARATH (Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.900e-25
Identity = 76/222 (34.23%), Postives = 112/222 (50.45%), Query Frame = -2
Query:   43 GDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXGSLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSK-RSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIA---ESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 696
            G E+    E+E    E    K + LP  + + +LK+QTG+ +I+  +IR TL  +FGED +P  ++ +  L N                                          E + G      +G S+  ++ D GIL+SGCQTDQ S D   + +  +AYGA S+AIQ+I++   +    +TN+ELV   R  LKK+G++Q+PGLYCHD  VDKPFIC
Sbjct:  206 GGEESFRGEIELEKDETLDIKTRYLPFESYLSLLKEQTGQTNIEPVRIRQTLLKLFGEDPSPNRQRGLSDLGN-----------------------------------------CEVDAGD-----SGASRLNAVTDNGILLSGCQTDQRSEDVYVT-RTGKAYGAFSDAIQMILSAPRKDKKKITNKELVSEARVFLKKRGYSQRPGLYCHDRFVDKPFIC 380          
BLAST of CB293721 vs. ExPASy Swiss-Prot
Match: MCA9_ARATH (Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = -2
Query:   46 DGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFI 291
            D GIL+SGCQ D+TSAD        +AYGA SNAIQ ++ E++GA+ N++LV+  R +L++ GF Q P LYC D + D  F+
Sbjct:  243 DSGILMSGCQADETSADVGVGN--GKAYGAFSNAIQRVLNENEGAMKNKQLVMMARDVLERLGFHQHPCLYCSDQNADATFL 322          
The following BLAST results are available for this feature:
BLAST of CB293721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MCA4_ARATH2.420e-7057.74Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1... [more]
MCA5_ARATH1.017e-6857.81Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1... [more]
MCA6_ARATH1.989e-5651.52Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1... [more]
MCA7_ARATH2.516e-5149.14Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1... [more]
MCA8_ARATH6.900e-2534.23Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1... [more]
MCA9_ARATH7.646e-1648.78Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293721 ID=CB293721; Name=CB293721; organism=Citrus sinensis; type=EST; length=757bp
ATTATTCGATCTCCTGAACCCCAAAAGCACCCGCTCGTATCAGCAGATAA
ACGGCTTATCAACATGATTATCATGGCAATAAAGGCCAGGTTGCTGAGTG
AATCCCTGCTTCTTCAACATCTGCCTAGTGGACAAAACAAGCTCCCGGTT
AGTCACTGCACCATCTGATTCAGCAATAATGATCTGAATTGCATTGCTGA
GAGCTCCGTAAGCTTCGCTAGCCTTCCCAGAAGGGCTGGCATCAGCAGAA
GTTTGGTCAGTCTGACATCCACTGACCAAAATCCCACCATCAGGAAGTGA
GCGCTTGCTTCCTCCAGCATAAACATCCTTCTTGCTGCCCACTTCAGTCT
CCAAGGCAGGTTTTGCATAACTCTCATCACTCTCTTCCAGCTTATGCTTT
AGAAATTCTTGAGCGAGACTACCTACCATGCCCAAAAACCCACCACCCCC
ACTTTCACCATCCCCTTGCTTAAGTTTGTTAAGAAGGACCTTCATGAACT
TCTTCACTTTTGGGGTCGCATCTTCCCCAAACATATCAAAAAGGGTTGGC
CTTATCTTCCCGACGTCAATGTCATCTTTACCAGTTTGCTGCTTGAGTAT
TTCAATAAGTGTTGAGAGGGGTAGGGACTTGTTCTTATGATAACCTCCCT
CACCATATCCGGCTTCAACTTCACGATCTTCAACATCTTCATCACCACTA
GGGCGGTGATGGCGCAACCCAGAAGGAATGTGAATTCCACGAGATTCAAA
TGCATTT
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