CB293729

Overview
NameCB293729
Unique NameCB293729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:729..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.178e-82
Identity = 141/169 (83.43%), Postives = 153/169 (90.53%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDCA AFNN GCNGGLPSQAFEYIK NGGLDTE+AYPYTGKD  CKFS ENVGVQVL+SVNITLG EDEL+HAVGLV PVS+AFEV+  FR YKSGVY+ + CG+TPMDVNHAV+AVGYGVEDGVPYW+IKNSWG  WGD G+FKMEMGKNMCGIATCASYPVVA
Sbjct:  190 EQQLVDCAGAFNNYGCNGGLPSQAFEYIKSNGGLDTEKAYPYTGKDETCKFSAENVGVQVLNSVNITLGAEDELKHAVGLVRPVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGIATCASYPVVA 358          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.599e-81
Identity = 140/169 (82.84%), Postives = 153/169 (90.53%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDCA  FNN GC+GGLPSQAFEYIKYNGGLDTEEAYPYTGKDG CKFS +N+GVQV DSVNITLG EDEL+HAVGLV PVSVAFEVV  FRFYK GV++S  CGNTPMDVNHAV+AVGYGVED VPYW+IKNSWG  WGD+G+FKMEMGKNMCG+ATC+SYPVVA
Sbjct:  190 EQQLVDCAGTFNNFGCHGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGGCKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGVATCSSYPVVA 358          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.936e-81
Identity = 138/169 (81.66%), Postives = 151/169 (89.35%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDC  AFNN GCNGGLPSQAFEYIKYNGGLDTEE+YPY G +G+CKF  ENVGV+VLDSVNITLG EDEL+ AVGLV PVSVAFEV+ GFR YKSGVY+S  CG TPMDVNHAV+AVGYGVEDGVPYW+IKNSWG  WGD G+FKMEMGKNMCG+ATCASYP+VA
Sbjct:  192 EQQLVDCGFAFNNFGCNGGLPSQAFEYIKYNGGLDTEESYPYQGVNGICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVRPVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASYPIVA 360          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.774e-80
Identity = 135/169 (79.88%), Postives = 155/169 (91.72%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDCA A+NN GC+GGLPSQAFEYIKYNGGLDTEEAYPYTG +G+C +  ENVGV+VLDSVNITLG EDEL++AVGLV PVSVAF+V++GFR YKSGVY+S  CG +PMDVNHAV+AVGYGVE+GVPYW+IKNSWG  WGD+G+FKMEMGKNMCGIATCASYP+VA
Sbjct:  194 EQQLVDCATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVNGICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCASYPIVA 362          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.355e-79
Identity = 134/169 (79.29%), Postives = 154/169 (91.12%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDCA AFNN GCNGGLPSQAFEYIK+NGGLDTEEAYPYTGK+G+CKFS  N+GV+V+ SVNITLG E EL++AV LV PVSVAFEVV GF+ YKSGVY+ST+CG+TPMDVNHAV+AVGYGVE+G PYW+IKNSWG  WG+ G+FKMEMGKNMCG+ATCASYP+VA
Sbjct:  188 EQQLVDCAGAFNNFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTGKNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASYPIVA 356          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.952e-77
Identity = 133/169 (78.70%), Postives = 148/169 (87.57%), Query Frame = -2
Query:  203 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPVVA 709
            EQQ+VDCA  FNN GCNGGLPSQAFEYIKYNGG+DTEE+YPY G +GVC +  EN  VQVLDSVNITL  EDEL++AVGLV PVSVAF+V+DGFR YKSGVY+S  CG TP DVNHAV+AVGYGVE+GVPYW+IKNSWG  WGD+G+FKMEMGKNMC IATCASYPVVA
Sbjct:  193 EQQLVDCAGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVNGVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASYPVVA 361          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.037e-56
Identity = 102/167 (61.08%), Postives = 123/167 (73.65%), Query Frame = -2
Query:  209 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPV 709
            EQQ+VDCAQ FNN GC GGLPSQAFEYI YN G+  E++YPY GK+G CKF+ E     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG  WG++G+F +E GKNMCG+A CASYP+
Sbjct:  164 EQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASYPI 330          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = -2
Query:  209 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPV 709
            EQQ+VDCAQ FNN GC GGLPSQAFEYI+YN G+  E+ YPY G+D  CKF  +     V D  NIT+  E+ +  AV L  PVS AFEV + F  Y+ G+YSST C  TP  VNHAV+AVGYG E+G+PYW++KNSWG  WG +G+F +E GKNMCG+A CASYP+
Sbjct:  166 EQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 101/167 (60.48%), Postives = 123/167 (73.65%), Query Frame = -2
Query:  209 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPV 709
            EQQ+VDCAQAFNN GC GGLPSQAFEYI YN G+  E++YPY GKD  C+F+ +     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG  WG++G+F +E GKNMCG+A CASYP+
Sbjct:  164 EQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPI 330          
BLAST of CB293729 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 1.154e-55
Identity = 100/167 (59.88%), Postives = 120/167 (71.86%), Query Frame = -2
Query:  209 EQQVVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSYENVGVQVLDSVNITLGVEDELQHAVGLV*PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWMIKNSWGEIWGDHGFFKMEMGKNMCGIATCASYPV 709
            EQQ+VDCAQ FNN GC GGLPSQAFEYI YN G+  E+ YPY GKDG CKF        V D  NIT+  E+ +  AV L  PVS AFEV   F  Y++G+YSST C  TP  VNHAV+AVGYG ++G+PYW++KNSWG  WG +G+F +E GKNMCG+A CASYP+
Sbjct:  166 EQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
The following BLAST results are available for this feature:
BLAST of CB293729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
ALEU_ARATH7.178e-8283.43Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH1.599e-8182.84Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP2_MAIZE7.936e-8181.66Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ORYC_ORYSJ8.774e-8079.88Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC4.355e-7979.29Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ALEU_HORVU6.952e-7778.70Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_RAT3.037e-5661.08Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_PIG3.966e-5659.28Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_MOUSE3.966e-5660.48Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATH_HUMAN1.154e-5559.88Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cd01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cd01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293729 ID=CB293729; Name=CB293729; organism=Citrus sinensis; type=EST; length=710bp
ACATGGACCTATATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCAT
TGCTATTGTAGATTATATGGACATTAATCTCCCAATTTATTTCGTACATA
AAGCCAACCATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATG
AGCAAATGACTTGCTGATACCCAGATCCAACTATTTCTTCAGGAGCACAC
TAAGCCACAACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTT
CCCCATCTCCATCTTAAAGAAACCATGATCGCCCCAGATCTCTCCCCAAG
AGTTCTTAATCATCCAATATGGAACACCATCTTCAACTCCGTACCCAACA
GCAACGACGGCATGGTTCACATCCATGGGAGTATTTCCACATTTAGTGCT
GCTGTAAACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATG
CCACACTCACAGGTCAAACAAGACCAACTGCATGCTGTAATTCATCTTCA
ACACCCAAGGTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTC
ATATGAAAATTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCT
CAGTATCAAGGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGC
AACCCACCATTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAC
CTGCTGTTCT
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