CB293733

Overview
NameCB293733
Unique NameCB293733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5967 contig Csv1_Contig5967:7..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.444e-114
Identity = 195/221 (88.24%), Postives = 205/221 (92.76%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMXXXXXXXXXXXXXXIGH 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPARFR+LDFGERNGYLKGVITE+IHDPGRGAPLARVTFRHPFRY+HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIPEGAVVCNVEH VGDRGVFARCSGDYA+VISHNPDN TTR+KLPSGAKKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK++VKRNCWPKVRGVAM              IGH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 6.656e-112
Identity = 190/221 (85.97%), Postives = 204/221 (92.31%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMXXXXXXXXXXXXXXIGH 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARV FRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIPEGAV+CNVEHHVGDRGVFAR SGDYA+VI+HNPDNDT+RIKLPSG+KKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK++VKRNCWPKVRGVAM              IGH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.693e-112
Identity = 192/221 (86.88%), Postives = 202/221 (91.40%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMXXXXXXXXXXXXXXIGH 710
            MGR+IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITE+IHDPGRGAPLARVTFR+PFRY HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIPEGAVVCNVEH VGDRGVFARCSG YA+VISHNPDN TTRIKLPSG+KKIVPSGCR MIGQVAGGGRTEKP+LKAGNAYHK++VKRNCWPKVRGVAM              IGH
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 399.053 bits (1024), Expect = 1.255e-110
Identity = 190/221 (85.97%), Postives = 203/221 (91.86%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMXXXXXXXXXXXXXXIGH 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARVTFRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGV AR SGDYA+VI+HNPD+DTTRIKLPSG+KKIVPSGCRAMIGQVAGGGRTEKP+LKAGNAYHK++VKRN WPKVRGVAM              IGH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGH 221          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 3.661e-102
Identity = 176/222 (79.28%), Postives = 194/222 (87.39%), Query Frame = 3
Query:   48 MGRVIRAQRKGA-GSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMXXXXXXXXXXXXXXIGH 710
            MGRVIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG++TEIIHDPGRGAPLARV FRHPFRY  QKELFVAAEGMYTGQ++YCG+KA L+VGNVLPL SIPEGAV+CNVE HVGDRG  AR SGDYA+VI+HNP+++TTR+KLPSG+KKI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK+K KRNCWP VRGVAM              IGH
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGH 222          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 4.496e-84
Identity = 145/204 (71.08%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MGRVIRAQRKGAGSVF++HT  RKG  + R LD+ ER+GYLKGV+ +IIHDPGRGAPLA V FR P+R++  K+LF+AAEGMYTGQFVYCGR+A L +GNVLP+  +PEG +VCN+E   GDRG  AR SG+YA VI+HNPD   TR+KLPSGAKK++PS  RAMIG VAGGGR +KP+LKAG AYHK+KVKRNCWPKVRGVAM
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAM 204          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.669e-84
Identity = 145/204 (71.08%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MGRVIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GV+ +IIHDPGRGAPLA V FR P+RY+ +KELF+A EGM+TGQFVYCGRKATL +GNV+PL  +PEG ++CN+E   GDRG  AR SG+YA VI+HN D   TR+KLPSGAKK+VPS  RAM+G VAGGGR +KP+LKAG AYHK+KVKRN WPKVRGVAM
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAM 204          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 2.467e-82
Identity = 138/204 (67.65%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELFVAAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC VE   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK+K KRNCWP+VRGVAM
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM 204          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.467e-82
Identity = 141/204 (69.12%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGV+ +IIHDPGRGAPLA V FR P++++ +KELF+A EG+YTGQFVYCG+KATL VGNV+P+ ++PEG +VCN+E  +GDRG  AR SG++A VI HNPD   TR+KLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK+KVKRNCWP VRGVAM
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM 204          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.467e-82
Identity = 141/204 (69.12%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGV+ +IIHDPGRGAPLA V FR P++++ +KELF+A EG+YTGQFVYCG+KATL VGNV+P+ ++PEG +VCN+E  +GDRG  AR SG++A VI HNPD   TR+KLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK+KVKRNCWP VRGVAM
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM 204          
The following BLAST results are available for this feature:
BLAST of CB293733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_SOLLC2.444e-11488.2460S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH6.656e-11285.9760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC8.693e-11286.8860S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH1.255e-11085.9760S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL82_ARATH3.661e-10279.2860S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA4.496e-8471.0860S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_DROME7.669e-8471.0860S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_XENLA2.467e-8267.6560S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_SPOFR2.467e-8269.1260S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR2.467e-8269.1260S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293733 ID=CB293733; Name=CB293733; organism=Citrus sinensis; type=EST; length=712bp
GCCCTTGGCCAAAACCCTAGACAGAGAGTCACGGCGAGTCGATTCAAATG
GGACGAGTCATTAGAGCACAGCGTAAGGGAGCGGGCTCCGTCTTCAAGTC
GCACACACACCACCGCAAGGGCCCGGCCAGGTTCCGCTCGCTTGATTTCG
GGGAACGCAACGGCTACCTGAAGGGAGTCATAACGGAGATCATCCATGAT
CCTGGCCGCGGCGCCCCGCTGGCCCGGGTCACGTTTCGTCACCCGTTTAG
GTACCAGCACCAGAAGGAGCTGTTCGTAGCGGCTGAAGGGATGTACACTG
GGCAGTTCGTGTACTGCGGAAGGAAGGCGACTTTGGTTGTCGGAAATGTG
TTGCCCTTGCGATCGATCCCTGAAGGAGCGGTGGTTTGTAATGTGGAGCA
TCACGTGGGTGATCGCGGTGTCTTTGCCAGATGTTCGGGTGATTATGCTG
TTGTCATTAGTCATAATCCAGATAACGACACTACTCGGATTAAGCTCCCA
TCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGTGCTATGATTGGTCA
AGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTTGAAGGCAGGAAATG
CTTATCACAAGTTCAAAGTGAAGAGGAACTGCTGGCCCAAGGTCCGTGGT
GTTGCCATGAACCCTGGTGAGCATCCCCATGGTGGTGGTAACCACCAGCA
CATTGGGCATGC
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