CB293798

Overview
NameCB293798
Unique NameCB293798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13632 contig Csv1_Contig13632:90..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.380e-67
Identity = 124/174 (71.26%), Postives = 142/174 (81.61%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTRR 703
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSN  AL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFDV  D HAPDSIELLR  GIDFERNR EGV+S RFAELMMSSGL+CNES SWVTFHSAYDFGYLVKILTRR
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRR 183          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.380e-67
Identity = 127/174 (72.99%), Postives = 142/174 (81.61%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTRR 703
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+N  AL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN  +GV+S RFAELMMSSGLVCNE  SWVTFHSAYDFGYL+KILTRR
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 185          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50
Identity = 99/173 (57.23%), Postives = 126/173 (72.83%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+N + L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N E G+DS RFAEL+MSSG+V NE+  WVTFHS YDFGYL+K+LT
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT 176          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 95/173 (54.91%), Postives = 124/173 (71.68%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK N   L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F++  D +A +SIELLR  GIDF++N E+G+D VRF ELMMSSG+V N++ SWVTFH  YDFGYLVK+LT
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLT 175          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45
Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+N + L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+  WVTFHS YDFGYL+K+LT
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT 175          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.015e-45
Identity = 93/173 (53.76%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+N + L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+V +D  A DSIELLR   ID E+N E GVD+ RFAEL+M SG+V N+   WVTFH  YDFGYL+K+L+
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLS 185          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 2
Query:  182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTR 700
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++N  +L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF++++E G++   FAEL++ SGLV  E  +W+TFHS YDF YL+K +T+
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQ 181          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ N   L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E   W++FHS YDFGYL+KILT
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ N   L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E   W++FHS YDFGYL+KILT
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170          
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ N   L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E   W++FHS YDFGYL+KILT
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170          
The following BLAST results are available for this feature:
BLAST of CB293798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH8.380e-6771.26Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH8.380e-6772.99Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH7.127e-5057.23Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH8.154e-4654.91Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH3.099e-4552.60Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH9.015e-4553.76Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO3.669e-3846.55Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_MOUSE1.884e-3445.35CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.884e-3445.35CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.884e-3445.35CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293798 ID=CB293798; Name=CB293798; organism=Citrus sinensis; type=EST; length=705bp
GCACTAGGCAACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTT
TCAAATCTCACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCA
TCACTCATCATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTC
AAATTCCAGCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTA
ATTTGGAATCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCT
TTTATTTCCATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGT
GGACCCCTCCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACT
ACAAGGTTTTGAAATCCAACGGCCACGCCTTGAACTTGATCCAGGTGGGC
CTCACTCTCTCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGG
CAACAATAAATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGA
CTGACGCCCACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATT
GACTTTGAGCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGA
GTTGATGATGTCGTCGGGACTCGTCTGTAACGAGTCGGCGAGTTGGGTCA
CGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGC
CGGAG
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