CB293798
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.380e-67 Identity = 124/174 (71.26%), Postives = 142/174 (81.61%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTRR 703 R+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D R+ P+ Y +LKSN AL+LIQVGLTLSD+ GNLPDLG N ++IWEFNFRDFDV D HAPDSIELLR GIDFERNR EGV+S RFAELMMSSGL+CNES SWVTFHSAYDFGYLVKILTRR Sbjct: 15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRR 183
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.380e-67 Identity = 127/174 (72.99%), Postives = 142/174 (81.61%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTRR 703 REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D Y +LK+N AL+LIQVGLTLSD +GNLPDLG + FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN +GV+S RFAELMMSSGLVCNE SWVTFHSAYDFGYL+KILTRR Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 185
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50 Identity = 99/173 (57.23%), Postives = 126/173 (72.83%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 REVW NLESE LI +V+D +PF++MDTEFPG+V RP T + HY+ LK+N + L +IQ+GLT SD GNLP G+ +NK+ IW+FNFR+FD+ +D +A DSIELLR GIDF +N E G+DS RFAEL+MSSG+V NE+ WVTFHS YDFGYL+K+LT Sbjct: 13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT 176
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46 Identity = 95/173 (54.91%), Postives = 124/173 (71.68%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 REVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y +Y+ LK N L LIQVGLT SD +GNLP G+ +KF IW+FNFR+F++ D +A +SIELLR GIDF++N E+G+D VRF ELMMSSG+V N++ SWVTFH YDFGYLVK+LT Sbjct: 13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLT 175
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45 Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 REVW NL+ E +LI V+D +P+++MDTEFPG+V RP S Y HY+ LK+N + L +IQ+GLT S+ GNLP G+ + IW+FNFR+FD+ +D A DSIELL+ GID +N +G+DS RFAEL+MSSG+V NE+ WVTFHS YDFGYL+K+LT Sbjct: 13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT 175
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 9.015e-45 Identity = 93/173 (53.76%), Postives = 120/173 (69.36%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 REVW NLE E LI Q ID +P+++MDTEFPG+V + +P+ PY + + Y LK+N + L LIQ+GLTLSD GNLP G+ N + IW+FNFR+F+V +D A DSIELLR ID E+N E GVD+ RFAEL+M SG+V N+ WVTFH YDFGYL+K+L+ Sbjct: 17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLS 185
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38 Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 2 Query: 182 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILTR 700 R+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP V S+ Y HY+ L++N +L +IQ+GL LSD GN P W+FNF F++ D +AP+SIELL GIDF++++E G++ FAEL++ SGLV E +W+TFHS YDF YL+K +T+ Sbjct: 23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQ 181
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34 Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2 Query: 185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L+ N L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ EEG+++ FAEL+M+SG+V E W++FHS YDFGYL+KILT Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34 Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2 Query: 185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L+ N L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ EEG+++ FAEL+M+SG+V E W++FHS YDFGYL+KILT Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170
BLAST of CB293798 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34 Identity = 78/172 (45.35%), Postives = 110/172 (63.95%), Query Frame = 2 Query: 185 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNGHALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESASWVTFHSAYDFGYLVKILT 697 EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L+ N L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ EEG+++ FAEL+M+SG+V E W++FHS YDFGYL+KILT Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILT 170 The following BLAST results are available for this feature:
BLAST of CB293798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293798 ID=CB293798; Name=CB293798; organism=Citrus sinensis; type=EST; length=705bpback to top |