CB293806

Overview
NameCB293806
Unique NameCB293806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig332 contig Csv1_Contig332:351..1145. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58
Identity = 112/217 (51.61%), Postives = 146/217 (67.28%), Query Frame = -2
Query:  159 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVG--SGFL-DPVQKLCSGGRDNTVKVWK-LYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQW 794
            IIWKE N   W K H    H SSVNS+ WAPH+ GL +ACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG DN +K+W+   +G WK +    L+ H DWVRDVAWAP++GLP  TIAS S+DG+V IW      G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW
Sbjct:   84 IIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58
Identity = 112/217 (51.61%), Postives = 146/217 (67.28%), Query Frame = -2
Query:  159 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVG--SGFL-DPVQKLCSGGRDNTVKVWK-LYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQW 794
            IIWKE N   W K H    H SSVNS+ WAPH+ GL +ACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG DN +K+W+   +G WK +    L+ H DWVRDVAWAP++GLP  TIAS S+DG+V IW      G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW
Sbjct:   84 IIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.299e-57
Identity = 112/217 (51.61%), Postives = 145/217 (66.82%), Query Frame = -2
Query:  159 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVG--SGFL-DPVQKLCSGGRDNTVKVWK-LYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQW 794
            IIWKE N   W K H    H SSVNS+ WAPH+ GL +ACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGG DN +K+WK   +G WK +    L+ H DWVRDVAWAP++GLP  TIAS S+DG+V +W      G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW
Sbjct:   84 IIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 9.599e-57
Identity = 110/217 (50.69%), Postives = 145/217 (66.82%), Query Frame = -2
Query:  159 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVG--SGFL-DPVQKLCSGGRDNTVKVWK-LYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQW 794
            IIW+E N   W K H    H SSVNS+ WAPH+ GL +ACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGG DN +K+WK   +G WK +    L+ H DWVRDVAWAP++GLP  TIAS S+DG+V IW       + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW
Sbjct:   84 IIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 99/218 (45.41%), Postives = 136/218 (62.39%), Query Frame = -2
Query:  150 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSG---FLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 794
            I+WKE  +N W   H +  H+ SVNSI WAPHE GL +AC SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S       P++++ +G  DN +K++K     W +D    L+ H DWVRDVAWAPN+GLP   IAS S+D  VI+W    E   W GK L  F   V+RVSWS+ GNILAV+ G+N VTLW+E VD +W+ +
Sbjct:   82 IVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVW-TQDENGVWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLI 295          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45
Identity = 102/224 (45.54%), Postives = 140/224 (62.50%), Query Frame = -2
Query:  141 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPV---QKLCSGGRDNTVKVWKL--YNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVIAV 794
            +IW+E N   W + + F  HK+SVN + W+PHE G  +AC SSDGN+SV   + +  W+ S I  AH +GV SVSWAP+T+PG++V S         ++  +GG DN +K+W      G +K++  P L  H DWVRDVAW+P + L K  IASASED  V IW        QW  KVL  F   V+RVSWSL+GN+LA + G+N VTLW+E + G+W+ V ++
Sbjct:   70 LIWREQNG-AWQRIYDFSLHKASVNVVSWSPHEAGCVLACASSDGNVSVLEFKDNNSWEHS-IFHAHGLGVNSVSWAPATNPGSIVSSKPSPKSTGNRRFVTGGSDNALKIWAFDAATGAYKLEREP-LTGHTDWVRDVAWSPTV-LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSI 288          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.438e-44
Identity = 98/229 (42.79%), Postives = 131/229 (57.21%), Query Frame = -2
Query:  150 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALV------------GSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVL-------------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 761
            IK+H    H +SVNSI WAPHELG  +AC SSDGN+SV T   DG W    +  AHPVG  +VSWAP+  PG+L+             +G    V++  S G DNTVK+W+      +     ALQ H DWVRDVA+APN+GLP+  +A+AS+D  V+IW        W    L             + F   V+RVSWS++GN+LAV+ G+  +TLW+E + G W+ V
Sbjct:  134 IKEHTL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECV 359          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.464e-44
Identity = 99/225 (44.00%), Postives = 136/225 (60.44%), Query Frame = -2
Query:  150 IIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSG-FLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 794
            +IW+E +        S  W K   F  H +SVN I WAPHE G  +AC SSDG++SV   R D  W T +I  AH +GV S+SWAP+  PG+LV S   +   ++  +GG DN +K+W         +    L+ H DWVRDVAW+P++ L K  IASAS+D  V +W   A    QW  +VL +F   ++RVSWS +GNILAV+ G+N V+LW+E + GQW++V
Sbjct:   84 LIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWEKV 304          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.541e-43
Identity = 101/222 (45.50%), Postives = 139/222 (62.61%), Query Frame = -2
Query:  150 IIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSG---FLDPVQKLCSGGRDNTVKVWKL---YNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 794
            +IW+E  +  W +   F  HK+SVN + W+PHE G  +AC SSDGN+SV   + D  W+ + I  AH +GV SVSWAP+T PG++V S         ++  +GG DN +K+W      NG +K++  P L  H DWVRDVAW+P + L K  IASAS+D  V IW   A    +W+ KVL+ F   V+RVSWSL+GN+LA +  NN VTLW+E + G+W+ V
Sbjct:   85 LIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVLEFK-DNSWEHN-IFHAHGLGVNSVSWAPATTPGSIVSSNPGPGSTGNRRFVTGGSDNLLKIWTFDPATNG-YKLEREP-LAGHTDWVRDVAWSPTV-LQKSYIASASQDKTVRIWTSDAANPGEWKCKVLN-FDAAVWRVSWSLSGNVLAASSDNNKVTLWKENLKGEWENV 299          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 99/225 (44.00%), Postives = 135/225 (60.00%), Query Frame = -2
Query:  150 IIWKEGNSNE--------WIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQK-LCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 794
            +IW+E + N         W K   F  H +SVN + WAPHE G  +AC SSDG++SV   R D  W T +I  AH +GV S+SWAP+  PG+L+ S      Q+   +GG DN +K+W         +    L+ H DWVRDVAW+P++ L K  IASAS+D  V IW   A    QW  + L +F T ++RVSWS +GNILAV+ G+N V+LW+E + GQW++V
Sbjct:   81 LIWREQHQNATSPVAGSTWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKV 301          
The following BLAST results are available for this feature:
BLAST of CB293806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SEC13_RAT6.648e-5851.61Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE6.648e-5851.61Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_BOVIN3.299e-5751.61Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_HUMAN9.599e-5750.69Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI5.102e-5045.41Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_CHAGB1.698e-4545.54Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_USTMA1.438e-4442.79Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_EMENI5.464e-4444.00Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_NEUCR3.541e-4345.50Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_ASPFU4.625e-4344.00Protein transport protein sec13 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ch10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ch10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293806 ID=CB293806; Name=CB293806; organism=Citrus sinensis; type=EST; length=795bp
GATGCTCAGCTATGCAGGACCTTAAAAAGAGTGGTGGATTGCGTGTTTAG
GGTCCTCAAAAGAAATTATAAAGAGGTTCTAAAATGCAATCTTGTATTTC
GTGATAAAAAATTGAAAAACTTAAAAAAGTCCTACGGCCCAACTGCAATC
ACCTGTTGCCACTGCCCATCCACTGCTTCTTCCCACAGTGTTACATTGTT
GTTTCCATCAGCCACAGCCAATATGTTTCCAGTCAGAGACCAGCTGACTC
TATAAACAGGGGTCTTGAAGTCATGCAACACCTTACCTTCCCATTGATCT
CCTTCCCTGGCCACAGGCCATATAATAACTTTCCCATCCTCCGATGCACT
TGCAATAGTAAATTTTGGAAGCCCCAAGTTGGGAGCCCAAGCAACATCTC
TAACCCAATCAATATGCATTTGAAGAGCTGGAAAGCAGTCCATCTTCCAA
ATTCCATTGTACAGCTTCCACACCTTCACGGTATTATCACGACCACCTGA
ACAAAGCTTCTGAACTGGGTCAAGAAAACCAGAACCCACAAGTGCACCGG
GATCTGTTGATGGGGCCCATGAAACTGAAGTCACACCAACCGGATGAGCT
TGGTCAATCCGAGATGTATCCCAGCCGCCATCAGCTCTAGCCGTAAAAAC
TGATATGTTCCCATCTGACGAACCACAAGCCATACATAGACCGAGCTCAT
GAGGCGCCCAATCAATCGAATTGACTGACGATTTGTGGTCCTCAAAAACA
TGATCTTTGATCCACTCATTACTGTTACCCTCCTTCCATATTATG
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