CB293815

Overview
NameCB293815
Unique NameCB293815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293815_ssr394 microsatellite CB293815_ssr394:394..411. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13777 contig Csv1_Contig13777:51..798. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CB293815 vs. ExPASy Swiss-Prot
Match: ECP44_DAUCA (Phosphoprotein ECPP44 OS=Daucus carota GN=ECPP44 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 65/205 (31.71%), Postives = 82/205 (40.00%), Query Frame = 1 
Query:  145 ETKDRGMLDFLGKKEEEKPQHHDQEVIATEFE-KVHVSEPQPXXXXXXXXXXXXXXX--PGFLDKLHRSTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTTVPVEKLDDVXXXXXXXXXXXXXKKGFLNKIKEKLPGQQKKPEDHQV-PSPPAAEHPTSVXXXXXXXXXXXXXXXXXXXXXPGYHPKSEDEK 747
            E+ DRG+ DF+ K+E++     + +VIATEFE KV VSEP+P                 P  L+KLHRS S                                        DT+VPVE + +              KKGF+ KIKEKLPG  KK E+  V P PP A  P  V                     PGYHPK+  E+
Sbjct:   19 ESSDRGLFDFMKKEEKD-----ETKVIATEFEEKVQVSEPEPKYEDCKVVEEEEEKAAKPSLLEKLHRSGSSSSSSSSDEEVEEGGEKKKKKEKKGLKEKIEEKIHHKEE-DTSVPVEVVTE-----------PEKKKGFMEKIKEKLPGGGKKVEEETVAPPPPPAAAP--VDCAVEGDPAKKGILEKIKEKIPGYHPKTSTEE 204
The following BLAST results are available for this feature:
BLAST of CB293815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ECP44_DAUCA3.842e-1231.71Phosphoprotein ECPP44 OS=Daucus carota GN=ECPP44 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06da03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06da03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293815 ID=CB293815; Name=CB293815; organism=Citrus sinensis; type=EST; length=748bp
GCACATATCTCTGTGTTCTTGTCCGTTGATCTGTTGTTAAAAATTGTTGT
TTGTGAGTGATAATTGACAAGTATGGCTGAAGAGATCAAGAAGCAGCAGA
AGAGCCATGAGTACGAGCCGAGTGTTGGGACGGAAGGTGCAGTGGAGACC
AAGGATCGCGGGATGCTTGATTTCTTGGGGAAGAAAGAAGAGGAGAAACC
TCAACATCACGATCAGGAGGTGATCGCCACCGAGTTTGAGAAAGTTCATG
TCTCTGAGCCTCAGCCAAAGGTAGAGGAACACAGGAAGGAGGAGAAAGAG
GAAGAGAAGAAGCCCGGTTTCTTAGACAAACTTCACCGATCCACCAGCAG
GTCTAGCTCTTCAAGCGATGAGGAGGAGGGCGATGATGAGGAAAAGAAGA
AGAAGAAGAAGGAAAAGAAGGGACTGAAGGAGAAGCTCAAGGAGAAAATA
TCAGGTGAGAAAGAAGAGGACACGACAGTCCCTGTCGAGAAACTTGATGA
TGTCCATGCTCCCCACCACCAGGAAGAAGCCCATCCTGAAGAAAAGAAAG
GATTTCTCAACAAGATCAAGGAGAAACTACCAGGACAGCAAAAGAAACCT
GAAGATCATCAGGTCCCTTCTCCTCCTGCTGCTGAGCACCCCACATCAGT
CGAGGCTCCTGAGGCAGAGGCCAAGGAGAAGAAGGGCATATTGGAGAAAC
TCAAGGAGAAGCTCCCTGGCTACCACCCAAAGTCTGAGGACGAAAAGG
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