CB293821

Overview
NameCB293821
Unique NameCB293821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293821 vs. ExPASy Swiss-Prot
Match: YAM3_SCHPO (UPF0673 membrane protein C1F5.03c OS=Schizosaccharomyces pombe GN=SPAC1F5.03c PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 1 
Query:  160 YFLAKKGA------AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKA---------------VNDYGLXXXXXXXXXXXXXXXXXXXXXMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILE 762
            YFLA   +       +TL E + +A AASGKA GFL+L+W  G   SSLA  S+NLH+ L+++ +G + +GYRAL T S+   E+ Q   K       + PS V+    + T +G+ + + QVHP  F   +  +A               V++  +                      +     +E+  +++A GPW+ +   L    R+SG + HSI ++
Sbjct:   21 YFLAHHPSFNRDRDTITLFESAGIASAASGKASGFLSLEW-HGPSTSSLAALSYNLHKELSDQYDGVNKWGYRALDTWSIKADENCQQPDKLPEGIEWIAPSIVE----NVTRLGNKKNSGQVHPYKFCHAIYEEASKVANVTLVKGHVLSVDENEVEYRLIGDDYAPDEEEEITSAEELHTIHSMEATHIIVAAGPWTPQ---LIPNLRISGARIHSITID 234
The following BLAST results are available for this feature:
BLAST of CB293821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAM3_SCHPO3.149e-1728.83UPF0673 membrane protein C1F5.03c OS=Schizosacchar... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06da06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06da06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293821 ID=CB293821; Name=CB293821; organism=Citrus sinensis; type=EST; length=762bp
GCACTAGGACTGACTCTAATAGGCTCTAGAAAATTGTCCAAAACAACCAC
CTTCATCAACTGCTCCGCAGCACAAGCATCACCTCCCATGGACGGCCAGC
GCCACTCCAAAAAACACGTGGCAGTATGCGGTGGCGGCATCATCGGTGTT
TGCACTGCTTACTTCTTGGCCAAAAAAGGCGCCGCTGTCACACTCATTGA
GAAATCCTCCGTGGCATGCGCCGCATCCGGGAAAGCCGGAGGATTCCTCG
CTTTAGACTGGTGCGATGGTGGGCCTCTCTCTTCATTAGCCCGTGCGAGC
TTCAATCTCCACCGTTCGCTGGCCGAAGAACTCAACGGCCCAGACAATTA
CGGGTACCGAGCGCTTACGACTCTCAGCCTCACCGTAACGGAATCGCAGC
AAAGCGGTTCGAAACCCTCAAATAAGGCCAACTCTCTTATCCCTTCGTGG
GTTGATGGGCCGGCTAGAAGTCCGACTACAATTGGGTCGACCCAGACAAC
GGCCCAGGTTCATCCGCAGTTGTTTACAAAAACATTGCTGAACAAAGCTG
TGAATGATTATGGACTGGAGGTGGTGATAGGGAAAGTGGAGCGCGTGGGT
GTTGGCGAAGGAGGGCGAGTTGAGTCGGTAATGATAGAGGGTGGGCGAGT
TGTTGAGTCGGACGCTGTCGTTTTGGCGCTTGGGCCGTGGTCTGGTAAAT
TTGAATTGTTGGCTTCCATGTTCAGAGTGTCTGGTCTCAAGGCTCATAGT
ATCATTTTGGAG
back to top