CB293828

Overview
NameCB293828
Unique NameCB293828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8365 contig Csv1_Contig8365:430..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 465.692 bits (1197), Expect = 1.092e-130
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   90 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 325          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 9.589e-119
Identity = 213/236 (90.25%), Postives = 224/236 (94.92%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+G+FGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK +N NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  E F +AGVTSGFFELQPKEGLALVNGTAVGSG+A+ VLFE+NILA+MSEVLSAIFAEVMNGKPEFTD+LTHKLKHHPGQIEAAAIM
Sbjct:   91 ARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEERFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIM 326          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 9.589e-119
Identity = 212/236 (89.83%), Postives = 224/236 (94.92%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTE+SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G+ LN  EAF LAG++SGFFELQPKEGLALVNGTAVGSG+A+ VL+EANIL +MSEVLSA+FAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   75 AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGEKLNAEEAFRLAGISSGFFELQPKEGLALVNGTAVGSGMASMVLYEANILGVMSEVLSAVFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 310          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.252e-118
Identity = 211/236 (89.41%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+G+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILE ITK LNHN+TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA+G NG+ LN  EAF +AGV SGFFELQPKEGLALVNGTAVGSGLA+ VLF+ANILA+ SEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   82 ARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGETLNAEEAFRVAGVNSGFFELQPKEGLALVNGTAVGSGLASMVLFDANILAVFSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 317          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.252e-118
Identity = 211/236 (89.41%), Postives = 223/236 (94.49%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+G+FGNGTE+SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK +N NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  EAF +AGV  GFFELQPKEGLALVNGTAVGSG+A+ VLF++NILA+MSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   85 ARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGMASMVLFDSNILAVMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 320          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.252e-118
Identity = 211/236 (89.41%), Postives = 225/236 (95.34%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTE+SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G+ +N  EAF LAG+++GFFELQPKEGLALVNGTAVGSG+A+ VL+EANILA++SEV+SAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   80 AREGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGEKINAEEAFRLAGISTGFFELQPKEGLALVNGTAVGSGMASMVLYEANILAVLSEVISAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 315          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 4.759e-118
Identity = 211/237 (89.03%), Postives = 226/237 (95.36%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSG-FFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            +RAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTES+HTLPHSATRAAMLVR+NTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  +AF LAG  SG FFELQPKEGLALVNGTAVGSGLA+  L+EANIL++++EV+SA+FAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   82 SRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNAEQAFKLAGANSGLFFELQPKEGLALVNGTAVGSGLASIALYEANILSLLAEVMSAVFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 318          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 423.32 bits (1087), Expect = 6.215e-118
Identity = 210/236 (88.98%), Postives = 220/236 (93.22%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+G+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILE ITK LNHN+TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  EAF +AGV  GFFELQPKEGLALVNGTAVGSGLA+ VLF+AN+LA+ SEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   82 ARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGLASMVLFDANVLAVFSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 317          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 421.779 bits (1083), Expect = 1.808e-117
Identity = 212/236 (89.83%), Postives = 222/236 (94.07%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+GIFGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G+VLN   AF  AGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEAN+LA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   81 ARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPAGEVLNAESAFAQAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANVLALLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 316          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 3.085e-117
Identity = 211/236 (89.41%), Postives = 219/236 (92.80%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGG LQKELIRFLN+GIFGNGTESSHTLP SATRAAMLVR NTLLQGYSGIRFE+LE ITK +NHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ L P EAF  AG+  GFFELQPKEGLALVNGTAVGSGLA+ VLFEAN+LAI+SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQI AAAIM
Sbjct:   81 ARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKMINHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEPLTPAEAFTQAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIVAAAIM 316          
The following BLAST results are available for this feature:
BLAST of CB293828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PALY_CITLI1.092e-130100.00Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL5_SOLLC9.589e-11990.25Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL2_LITER9.589e-11989.83Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL3_TOBAC1.252e-11889.41Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL1_TOBAC1.252e-11889.41Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_LITER1.252e-11889.41Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PALY_DIGLA4.759e-11889.03Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL2_TOBAC6.215e-11888.98Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_HELAN1.808e-11789.83Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL2_POPKI3.085e-11789.41Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06da12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293828 ID=CB293828; Name=CB293828; organism=Citrus sinensis; type=EST; length=708bp
GCCCGCGCCGGCGTCAAGGCCAGCAGCGATTGGGTGATGGACAGCATGAT
GAAAGGGACTGATAGCTATGGTGTCACCACTGGCTTTGGTGCAACTTCTC
ACCGGCGAACCAAGCAAGGTGGTGCTTTGCAAAAGGAGCTCATTAGATTC
TTGAATTCTGGAATTTTTGGCAATGGCACTGAATCAAGCCACACATTGCC
TCACTCGGCAACAAGGGCAGCAATGCTGGTGAGAGTCAACACCTTGTTAC
AAGGATACTCAGGCATCAGGTTTGAGATCCTGGAAACCATTACCAAGTTC
CTTAACCATAACATCACCCCTTGCTTGCCGCTACGTGGCACGATCACCGC
GTCGGGCGACCTGGTCCCACTCTCGTACATTGCTGGGCTTTTGACAGGCA
GGCCCAACTCGAAGGCTGTTGGGTCCAACGGCCAAGTTCTCAACCCCACC
GAGGCCTTCAACCTAGCTGGGGTCACTAGTGGATTTTTTGAATTGCAGCC
TAAGGAAGGTCTTGCCCTGGTGAATGGCACAGCGGTTGGCTCTGGTTTAG
CTGCCACGGTACTCTTTGAGGCTAACATATTAGCCATTATGTCTGAAGTT
TTATCTGCAATTTTTGCGGAAGTGATGAATGGGAAACCTGAATTTACAGA
CCACTTGACACATAAGTTGAAGCACCATCCGGGACAAATTGAAGCTGCAG
CTATTATG
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