CB293849

Overview
NameCB293849
Unique NameCB293849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig336 contig Csv1_Contig336:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293849 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.898e-12
Identity = 50/159 (31.45%), Postives = 78/159 (49.06%), Query Frame = 2 
Query:  170 WSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTT 646
            W +   R  +LAS+L  +G+T     + +A N     E ++A+   G + + IN RL    I+ ++ H+E K+VL+D     ++ E     P   K    VL+A    H+N N S+Q         YE L+ +GD N+ W    +E +   L YTSGTT
Sbjct:   42 WKEVELRARKLASALGKMGLTPSDRCATIAWNNIRHLEVYYAVSGAGMVCHTINPRLFIEQITYVINHAEDKVVLLDDTFLPIIAEIHGSLP---KVKAFVLMA----HNNSNASAQMPG---LIAYEDLIGQGDDNYIW-PDVDENEASSLCYTSGTT 189
The following BLAST results are available for this feature:
BLAST of CB293849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ALKK_PSEOL3.898e-1231.45Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293849 ID=CB293849; Name=CB293849; organism=Citrus sinensis; type=EST; length=650bp
GCACTAGGCAGAAAAAGAAAAGAGAGGAAAAAAAAAAAACAATAAAATGG
ATGAGCTAAAACCATGCACAGCAAATTCATCTCCACTAACGCCGTTAGGT
TTCCTCGAAAGAGCAGCAACCGTTTACGGCGACTGTCCCTCAATCATCTA
CAACAACCTCATCTACACGTGGTCACAAACTCACCGTCGATGTCTCCAGC
TAGCTTCTTCCCTCTCATCCATCGGCATCACCAGAGGACACGTTGTGTCC
GTTGTCGCTCCCAACATCCCCGCCATGTACGAGGCTCACTTTGCTATCCC
TTTTACTGGCGCCATCCTCAACAACATCAACACTCGCCTCGACGCGCGTA
CAATCTCCGTACTCCTGCAGCACAGCGAATCAAAGCTCGTGCTTGTAGAT
TATCAGTCCCGGAATCTTGTCGTCGAAGCAATCTCTTTGTTTCCGTCCGA
CATCAAATGCCCTCCGTTAGTCCTCATCGCTGATCATACTGATCACGATA
ATGATAACAAATCATCACAGACCGTCGATTCCAACTTCTGTTGCACTTAC
GAGAGCCTCGTAACAAAAGGTGATCCTAATTTCAAATGGATCCGACCACA
AAACGAGTGGGACCCGATGATATTAAACTACACATCCGGTACGACGTCGT
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