CB293863

Overview
NameCB293863
Unique NameCB293863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293863_ssr181 microsatellite CB293863_ssr181:181..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:25..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 479.559 bits (1233), Expect = 7.869e-135
Identity = 232/238 (97.48%), Postives = 234/238 (98.32%), Query Frame = 1
Query:   28 MTRLASGELITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIYA 741
            MTRLASG LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQ DICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL +GLNIYA
Sbjct:    1 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYA 238          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.831e-99
Identity = 178/240 (74.17%), Postives = 202/240 (84.17%), Query Frame = 1
Query:   25 TMTRLASGE-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIYA 741
            TMTR++ G  L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQ DICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLP+GLNIYA
Sbjct:    4 TMTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYA 237          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.986e-97
Identity = 167/237 (70.46%), Postives = 193/237 (81.43%), Query Frame = 1
Query:   31 TRLASGELITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIYA 741
            ++L++    T++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVDSGPNDHIF++Y+DHGGPGVLGMP   Y+YA +L +VLKKKHASG YKSLVFYLEACESGSIFEGLLPD LNIYA
Sbjct:    4 SQLSTLLFFTIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPDDLNIYA 234          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.451e-93
Identity = 164/237 (69.20%), Postives = 188/237 (79.32%), Query Frame = 1
Query:   31 TRLASGELITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIYA 741
            T   +  L  LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQ DICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+SGPNDHIFIFYSDHGGPGVLG P   YIYA +L +VLKKKHASG YK+LVFYLEACESGSIFEGLLP+ +N+YA
Sbjct:    4 TTATTSLLALLLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINVYA 227          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 9.732e-93
Identity = 161/213 (75.59%), Postives = 187/213 (87.79%), Query Frame = 1
Query:  103 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIYA 741
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQ D+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AVILGNKTAL GGSGKVVDSGPNDHIFI+YSDHGGPGVLGMPTS  +YA++L DVLKKK+ASG YKSLVFYLEACESGSIFEGLLP+GLNIYA
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGLNIYA 222          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.918e-82
Identity = 139/186 (74.73%), Postives = 162/186 (87.10%), Query Frame = 1
Query:  181 DDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIY 738
            DDDD +GTRWAVL+AGS GF NYRHQ D+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVDS PND IF++YSDHGGPGVLGMP   Y+YA + I+VLKKKHA+G YK +V Y+EACESGSIFEG++P  ++IY
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEGIMPKDVDIY 239          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.729e-82
Identity = 138/184 (75.00%), Postives = 159/184 (86.41%), Query Frame = 1
Query:  187 DDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIY 738
            DD VGTRWAVL+AGSNG+ NYRHQ D+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AVILG+K+ + GGSGKV++S P D IFIFYSDHGGPGVLGMP + ++YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P  LNIY
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEGIMPKDLNIY 217          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.937e-81
Identity = 144/229 (62.88%), Postives = 175/229 (76.42%), Query Frame = 1
Query:   52 LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIY 738
            ++ L+      A  +R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQ D+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAVILG+K+ L GGSGKV++S P D IFI+YSDHGGPG+LGMP   Y+YA + IDVLKKKHASG+YK +V Y+EACESGS+FEG++P  LNIY
Sbjct:   21 MVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIY 237          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.612e-79
Identity = 140/229 (61.14%), Postives = 176/229 (76.86%), Query Frame = 1
Query:   52 LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIY 738
            ++ +++ + G     +D    ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQ D+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++S P D IF++YSDHGGPGVLGMP   Y+YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P  LNIY
Sbjct:   22 MLVMVMRIQGTNGKEQD---SVIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIFEGIMPKDLNIY 235          
BLAST of CB293863 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.782e-78
Identity = 130/187 (69.52%), Postives = 158/187 (84.49%), Query Frame = 1
Query:  178 NDDDDSVGTRWAVLLAGSNGFWNYRHQGDICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPDGLNIY 738
            + D+D VGTRWAVL+AGS+G+ NYRHQ D+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+ S PNDHIF++Y+DHGGPGVLGMP + +IYA + I+ LKKKHASG YK +V Y+EACESGSIFEG++P  LNIY
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIY 228          
The following BLAST results are available for this feature:
BLAST of CB293863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VPE_CITSI7.869e-13597.48Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH1.831e-9974.17Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA4.986e-9770.46Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPE1_PHAVU7.451e-9369.20Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH9.732e-9375.59Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO5.918e-8274.73Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
LEGU_CANEN7.729e-8275.00Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE_SOYBN2.937e-8162.88Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPE2_PHAVU1.612e-7961.14Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH1.782e-7869.52Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293863 ID=CB293863; Name=CB293863; organism=Citrus sinensis; type=EST; length=741bp
GCCCGTGGAAACCCCCTTCAAAAAACCATGACGCGCCTTGCCTCCGGCGA
GCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGAG
ACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTC
CATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGG
CACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACA
GGCATCAGGGTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGG
CTGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAA
TGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATG
ATGTTTACAAAGGAGTTCCGAAGGATTACACGGGGGAAGATGTTACTGTT
GAAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGGGG
CAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTCT
ACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATAC
ATATATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGG
GAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGTA
TCTTTGAGGGTCTTCTTCCTGACGGCTTAAATATCTATGCA
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