CB293865

Overview
NameCB293865
Unique NameCB293865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig446 contig Csv1_Contig446:66..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 128/260 (49.23%), Postives = 162/260 (62.31%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVISIAKPITEEAMTKLFCSTFPT-KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ------LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP-------DGLE-----SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEG 724
            MN G G  SYA NS+VQ  +IS+ + + +EA+ KL           IADLGCSSGPN+LL  S +++ +  +C  L   +PE  + LNDLP NDFN IF SL  F   ++K+      LG   G+ G CF + VPGSFYGRLFPR S+H  HSS SL WLSQVP       DG+       N+G I+++ TSP      Y  QFQ DFS+FL+ RSEELV  GRMVL+FLGR S DP+++E CY WELLA AL ++  EG
Sbjct:    9 MNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGCSSGPNSLLSISNIVETIQNLCHDLDRPVPELSLSLNDLPSNDFNYIFASLPEFYDRVKKRDNNYESLGFEHGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCGEVNKKDGVVITADLDNRGKIYLSKTSPKSAHKVYALQFQTDFSVFLRSRSEELVPGGRMVLSFLGRSSPDPTTEESCYQWELLAQALMSLAKEG 268          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 127/257 (49.42%), Postives = 159/257 (61.87%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVISIAKPITEEAMTKLFCSTFP-TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL---RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP------------DGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEG 724
            MN G G  SYA NS  Q  +IS+ + + +EA+ KL  S    + + IADLGCSSGPN+LL  S ++  ++ +C  L   +PE +V LNDLP NDFN I  SL  F   +   ++ LG   G    CF + VPGSFYGRLFPR S+H  HSS SL WLSQVP              LE N G I+++ TSP     AY  QFQ DF +FL+ RSEELV  GRMVL+FLGR+S DP+++E CY WELLA AL +M  EG
Sbjct:    9 MNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGCSSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNNKEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTITADLE-NMGKIYISKTSPKSAHKAYALQFQTDFLVFLRSRSEELVPGGRMVLSFLGRRSLDPTTEESCYQWELLAQALMSMAKEG 264          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.452e-55
Identity = 119/242 (49.17%), Postives = 158/242 (65.29%), Query Frame = 2
Query:   11 GVGNASYASNSLVQKKVISIAKPITEEAMTKLFCST--FPTKVAIADLGCSSGPNTLLVASELIKVVNKI-CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLE-SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEG 724
            G G  SYA+NS +QK ++S +  + +E +  +      FP    + D+GCSSGPN LLV S +I  +  +  +K  ++LPEF+VFLNDLP NDFN +F+ L              S   G CF  G+PGSFYGRL P+ S+H  +SSYS+ WLSQVP+GLE +N+ NI+MA+ SPP V  AY +Q++RDFS FLK R EE+V  GRMVLTF GR  +DPSSK+   I+ LLA  L +MV+EG
Sbjct:   14 GDGETSYANNSGLQKVMMSKSLHVLDETLKDIIGDHVGFPKCFKMMDMGCSSGPNALLVMSGIINTIEDLYTEKNINELPEFEVFLNDLPDNDFNNLFKLL--------------SHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDNNRQNIYMATESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLAKTLVDMVAEG 241          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: MT797_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 87/225 (38.67%), Postives = 116/225 (51.56%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVISIAKPITEEAMTKLFCSTFPTK------VAIADLGCSSGPNTLLVASELIKVVNKICDK-----LGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKG-----NIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT 628
            MNGG G  SY  NS  QK  I   K  T EA+ +     F  +      + I D GCS GPNT  V   +I  V +   K     +G+ L EFQV  ND P NDFNT+FR+   F +              + F  GVPGSF+GR+ P+NS+H+ H+SY+L WLS VP  +   K      +    +     V  AY  QF++DF  FL+ R+EELV+ G M+L+
Sbjct:   10 MNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLEFLNRNSEENILRIVDFGCSIGPNTFDVVQNIIDTVKQKRLKENKTYIGAPL-EFQVCFNDQPNNDFNTLFRTQPFFSR-------------KEYFSVGVPGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQCNNLVDEVTKAYKIQFRKDFGGFLEARAEELVSGGLMILS 220          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: MT810_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.467e-29
Identity = 87/221 (39.37%), Postives = 110/221 (49.77%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVISIAKPITE----EAMTKLFCSTFPTKVAIADLGCSSGPNTLLVASELIKVVN--KICDKLGSQLP--EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKG-----NIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 625
            M+ G    SY  NS  QK  IS A   T     E +     S F T   IAD GCS GPNT  VA  +I  V   ++ +   + L   EFQVF ND P NDFNT+FR+                    + F  GVPGSFYGR+ PRNS+H+ H+SY+  WLS+VPD +   K      N    +     V  AY  QF +D  +FL  R+EELV  G M++
Sbjct:   10 MSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQLSSDFGT-FRIADFGCSIGPNTFHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRT-------------QPLSPEREYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNLLEEVTKAYKVQFIKDMEIFLDARAEELVPGGLMIV 216          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: MT799_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 90/225 (40.00%), Postives = 117/225 (52.00%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVISIAKPITEEAMTK------LFCSTFPTKVAIADLGCSSGPNTLLVASELIKVVNKICDK-----LGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKG-----NIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT 628
            MNGG G  SY  NS  QK  I  AK  T EA+ K      L  ++    + IAD GCS GPNT  V   +I  V +   K     +G+ L EFQV  ND P NDFNT+FR+    Q I  KQ   +          GVPGSF+GR+ P+NS+H+ H +Y+L WLS VP  +   K      +    +     V  AY  QF++D   FL  R+EELV+ G M+L+
Sbjct:   10 MNGGDGPHSYIHNSSYQKVAIDGAKEKTSEAILKNLDLELLNRNSDENILRIADFGCSIGPNTFEVVQNIIDTVKQKNLKENNAYIGAPL-EFQVCFNDQPNNDFNTLFRT----QPISSKQAYLS---------VGVPGSFHGRVLPKNSLHIGHITYALHWLSTVPQHVCDKKSPALNKSYIQCNNLVEEVTEAYRVQFKKDMGDFLGARAEELVSGGLMILS 220          
BLAST of CB293865 vs. ExPASy Swiss-Prot
Match: MT878_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 84/222 (37.84%), Postives = 111/222 (50.00%), Query Frame = 2
Query:    2 MNGGVGNASYASNSLVQKKVIS----IAKPITEEAMTKLFCSTFPTKVAIADLGCSSGPNTLLVASELIKVVN----KICDKLGSQLP-EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPD------GLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMV 622
            M+GG    SY  NS  QK  I      A+    E +  L  +   +   IAD GCS GPNT      +I +V     K   +     P EFQV+ NDLP NDFNT+FR+     K              + F  GVPGSFYGR+ PRNS+H+ ++S++  WLS+VP+       L  NK N    +     V  AY  QF++D  +FLK R+EELV  G M+
Sbjct:   10 MSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSK-------------QEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNK-NYIHCNNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLMI 217          
The following BLAST results are available for this feature:
BLAST of CB293865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
JMT_BRARP2.232e-6249.23Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
JMT_ARATH4.655e-6049.42Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA3.452e-5549.17Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
MT797_ARATH8.562e-3038.67Probable S-adenosylmethionine-dependent methyltran... [more]
MT810_ARATH9.467e-2939.37Probable S-adenosylmethionine-dependent methyltran... [more]
MT799_ARATH2.109e-2840.00Probable S-adenosylmethionine-dependent methyltran... [more]
MT878_ARATH1.157e-2637.84Probable S-adenosylmethionine-dependent methyltran... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293865 ID=CB293865; Name=CB293865; organism=Citrus sinensis; type=EST; length=725bp
GATGAATGGAGGAGTAGGAAACGCAAGTTATGCCAGTAATTCACTGGTTC
AGAAAAAAGTCATATCCATTGCAAAGCCAATCACAGAGGAAGCCATGACC
AAACTCTTCTGCAGCACGTTCCCAACAAAGGTAGCAATTGCCGACTTGGG
CTGTTCTTCAGGACCAAACACTTTGCTTGTGGCATCTGAACTTATCAAAG
TAGTGAACAAGATCTGCGATAAGTTGGGCAGTCAATTACCAGAATTTCAA
GTGTTCCTGAACGATCTTCCGGGGAATGACTTTAACACCATATTCAGGTC
TTTAGCAAGCTTCCAAAAGATACTGAGAAAGCAATTAGGGTCGGCCTCTG
GGGCAGCTGGGCAGTGCTTCTTCACTGGGGTCCCTGGTTCTTTCTATGGC
AGGCTTTTCCCTCGCAATAGTGTGCATCTTTTCCACTCTTCTTATAGTCT
CCAATGGCTATCTCAAGTTCCAGATGGACTGGAGAGCAATAAAGGGAACA
TTTTCATGGCCAGTACAAGTCCGCCATGCGTGCTTACGGCATATTACGAG
CAATTTCAAAGAGATTTTTCATTGTTTCTCAAGTGTCGCTCAGAGGAATT
GGTGGCAGAAGGGCGCATGGTTTTAACATTTCTAGGAAGAAAAAGCCAAG
ATCCCTCAAGCAAAGAGTGCTGCTACATTTGGGAGCTCTTGGCCACGGCT
CTCAACAATATGGTCTCCGAGGGAC
back to top