CB293870

Overview
NameCB293870
Unique NameCB293870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 3.028e-89
Identity = 162/198 (81.82%), Postives = 175/198 (88.38%), Query Frame = -2
Query:  296 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 889
            S  FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+              VTG VSDLKVSGLFFAIGHEPATKFLDG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGSQ+ KS+
Sbjct:  136 SGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQQGKSD 333          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 8.809e-89
Identity = 161/199 (80.90%), Postives = 174/199 (87.44%), Query Frame = -2
Query:  296 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 892
            G+  FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYGSKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+              VTG VSDLKVSGLFFAIGHEPATKFLDGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct:  185 GNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYGSKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 383          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.199e-61
Identity = 117/191 (61.26%), Postives = 144/191 (75.39%), Query Frame = -2
Query:  320 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 892
            G + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKVY+I R+D  RAS IMQ RA  N KI++++N+V LEA G+               T + +DL V+GLF+AIGH PATK ++GQ++    GYI T PG++ TSVPGVFAAGDVQD KYRQA+T+AG+GCMA L+AE YL E+
Sbjct:  130 GEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYLIVRKDHLRASTIMQRRAEQNDKIEILYNTVTLEAQGD--GKLLNNLRIKNVKTNEETDLPVNGLFYAIGHTPATKIVEGQVETDETGYIKTIPGSSLTSVPGVFAAGDVQDSKYRQAITSAGSGCMAGLDAEKYLTEL 318          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 1.015e-60
Identity = 114/191 (59.69%), Postives = 145/191 (75.92%), Query Frame = -2
Query:  320 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 892
            G + +W RGISACAVCDGA PIFR+KPLAV+GGGDSA EEA+FLTKYGSKV+++ R+D  RAS IMQ R   N KI+V++N+  +EA G+               TG+ SDL V+GLF+AIGH PAT+ + GQ+DL   GY+ T PG+T T+VPG+FAAGDVQD +YRQAVT+AG+GCMAAL+AE +L E+
Sbjct:  130 GEETYWQRGISACAVCDGAVPIFRNKPLAVVGGGDSACEEASFLTKYGSKVFMLVRKDHMRASTIMQRRVERNEKIEVLYNTAPVEAKGD--GSLLDALRVRDTRTGEESDLPVNGLFYAIGHTPATQLVAGQVDLDESGYVKTVPGSTLTNVPGLFAAGDVQDSRYRQAVTSAGSGCMAALDAEKFLSEL 318          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.325e-60
Identity = 115/191 (60.21%), Postives = 143/191 (74.87%), Query Frame = -2
Query:  320 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 892
            G + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKVY++ R+D  RAS+IMQ RA  N KI++++N V LEA G+               T +  DL V+GLF+AIGH PAT  + GQ+DL   GY+ T PG+T T+VPGVFAAGDVQD +YRQA+T+AG+GCMAAL+AE Y+ E+
Sbjct:  160 GEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYMLVRKDHLRASQIMQRRAEQNEKIEILYNHVTLEAKGD--GKYLNALKVKNVKTNEEYDLPVNGLFYAIGHTPATNIVAGQVDLDEAGYVKTVPGSTLTNVPGVFAAGDVQDARYRQAITSAGSGCMAALDAEKYITEL 348          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.325e-60
Identity = 114/190 (60.00%), Postives = 137/190 (72.11%), Query Frame = -2
Query:  323 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 892
            G D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EEA FLTKYGSKVY++ RRD  RAS IMQ R   N K++++WNS   EA G+               T +  DL V+GLF+AIGH PAT+    QL+     YI+TKPGT  TS+PGVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E +L E
Sbjct:  130 GEDTYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSACEEALFLTKYGSKVYLLVRRDQLRASNIMQKRVQNNDKLEILWNSEAKEAKGD--GKLLQNISVYNNKTKETKDLPVNGLFYAIGHIPATQIFAKQLETDDQNYILTKPGTAETSIPGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKFLSE 317          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_SCHPO (Thioredoxin reductase OS=Schizosaccharomyces pombe GN=trr1 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.261e-60
Identity = 115/191 (60.21%), Postives = 140/191 (73.30%), Query Frame = -2
Query:  320 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 892
            G D +W  GISACAVCDGA PI+R+KPLAV+GGGDSA EEA FLTKYGSKVY++ RRD  RAS IM  R L NPK++V+WN+V  EA G+               T +VSDL+V+GLF+AIGH PATK +  Q++L   GYI T  GT  TS+PG FAAGDVQDK +RQA+T+AG+GC AAL A HYL+E+
Sbjct:  130 GEDTYWQAGISACAVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTKYGSKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTVAEEAQGD--GKLLNNLRIKNTNTNEVSDLQVNGLFYAIGHIPATKLVAEQIELDEAGYIKTINGTPRTSIPGFFAAGDVQDKVFRQAITSAGSGCQAALLAMHYLEEL 318          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 8.592e-60
Identity = 115/191 (60.21%), Postives = 141/191 (73.82%), Query Frame = -2
Query:  320 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 892
            G + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+++ R+D  RAS IMQ RA  N KI++++N+V LEA G+                 + +DL VSGLF+AIGH PATK + GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG+GCMAAL+AE YL  +
Sbjct:  130 GEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGD--GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL 318          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.466e-59
Identity = 111/190 (58.42%), Postives = 142/190 (74.74%), Query Frame = -2
Query:  323 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 892
            G D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EEA FLTKYGSKVY+I R+D  RAS +M  R  ++PK+++++N V +EA G+              +TG+  DL+V+GLF+AIGH PAT  + GQ++   +GY++T PGT  TSV GVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E  L E
Sbjct:  130 GEDQYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSAAEEALFLTKYGSKVYVIVRKDKLRASAVMAKRLASHPKVEILFNHVSIEAKGD--GKLLNALEIENTLTGEKRDLEVNGLFYAIGHIPATSIVKGQVETDEEGYVVTVPGTANTSVKGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKLLAE 317          
BLAST of CB293870 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.116e-58
Identity = 112/190 (58.95%), Postives = 140/190 (73.68%), Query Frame = -2
Query:  323 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXVTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTYTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 892
            G + +W RGISACAVCDGAAPIFR KPLAV+GGGDSA EE+ FLT+Y +KVY++ RRD  RAS IM  R L +PKI+++WN+V LE+ G+               T +VS+L+V+GLF+AIGHEPAT  + GQ++   DGYIITK G   T++ G FAAGDVQDKK+RQAVT+AG+GCMA L AE  L E
Sbjct:  128 GEEIYWQRGISACAVCDGAAPIFRGKPLAVVGGGDSAAEESLFLTRYATKVYLLVRRDKLRASPIMAKRLLHHPKIEILWNTVALESLGD--NNLMNCVKIKNVKTQEVSELQVNGLFYAIGHEPATTLVRGQVECDKDGYIITKNGGPETNIKGFFAAGDVQDKKWRQAVTSAGSGCMAGLAAERLLAE 315          
The following BLAST results are available for this feature:
BLAST of CB293870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TRXB1_ARATH3.028e-8981.82Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB2_ARATH8.809e-8980.90Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB_CANGA1.199e-6161.26Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB_ASHGO1.015e-6059.69Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]
TRXB_KLULA1.325e-6060.21Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]
TRXB_DEBHA1.325e-6060.00Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_SCHPO2.261e-6060.21Thioredoxin reductase OS=Schizosaccharomyces pombe... [more]
TRXB1_YEAST8.592e-6060.21Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_YARLI1.466e-5958.42Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB_PNECA2.116e-5858.95Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293870 ID=CB293870; Name=CB293870; organism=Citrus sinensis; type=EST; length=893bp
TTTTTTTTTTTTTTTTTACATAATGTAAAGAATAATATATTCTTAACAAA
TTCCATCCAACAATTACATTCTAAAATGCAGCACTAATACCAACTTAAAA
CAAATTCCTTATCCAATTAGTTTTTCCAACCAACTATTGGAAGCCAATAA
ATAAATCACTAAGACAGTACTGATTCATCACTTGAATTGGTCGAGAAAAA
GCCTTCTTCATTCAGAGGTAGATTTAGATCAAGTTTGCATGTAGACTATT
CTGCTTTCATCATATCCCAGCCCTGCCATTATCCTACAGTGAAGATTCAC
TCTTATCCTCCTGAGATCCTATCTCTTGCAAGTAATGCTCAGCTTCCAAG
GCTGCCATGCACCCAGTGCCGGCGGCGGTAACAGCCTGCCTGTACTTCTT
ATCCTGAACATCTCCAGCAGCAAACACTCCAGGGACACTAGTGTATGTAG
TCCCAGGTTTGGTAATAATATAACCATCAGAATGCAGGTCCAACTGACCA
TCCAAAAACTTAGTAGCAGGCTCGTGTCCAATGGCAAAGAACAAGCCAGA
CACCTTCAAATCAGAAACCTGTCCAGTCACCAAATTCTTCACCTTCAATC
CTCCCAGAACCTTCTTATCCCCTTCTCCATAAGCCTCTAAAACAACCGAA
TTCCAAATCACATCAATCTTAGGGTTCGTAAGTGCCCTGTTTTGCATAAT
CTTCGAAGCTCTAAAACTATCCCTCCTATGAATTATATAAACTTTTGATC
CGTACTTTGTCAAAAAGTTGGCTTCTTCCATGGCTGAATCCCCGCCACCA
ATCACGGCCAAGGGTTTGTCCCGAAATATCGGAGCGGCTCCATCACACAC
TGCGCAGGCCGATATGCCACGGTTCCAGAACGCATCTGAACCG
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