CB293876

Overview
NameCB293876
Unique NameCB293876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:235..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293876 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.403e-19
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = -2 
Query:  560 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 781
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB293876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.403e-1954.05Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293876 ID=CB293876; Name=CB293876; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTTTATTAGAACCCAAACATGATTAATAATATATACA
CAATTGCGGATTGCCCACATAACAAGAAAAACACTCTATCAAAGAAAAAG
GTCAAAAGAACCTCGAAGAGTGAGTAACAACTTTATTTTTAACTTAATAG
AAGGAAAAATGAAAGGTAGTAGTTTCAGCTTTTGAGTTGGAAGTAGGCAA
ATTCACAGCAAGATCAATCAAATTGATCCTTAATTGATAAATTAATGTGA
GTCCCATTGATTAGTCCAGTCTGCTTCACTTCCCACACGTGGAATGCTGT
TGATCCTAGTGTATTTATCAACCTTGAAATTGGCTCCACACATGACACCT
TCACTATCTACTCTTGGCATTGCCCTTATCTTGTTCATTGGATGCTCAAA
GCTCATCAATCCTCCTTCACTGTGGAACATGCACCCCTGTGGGAAGGGAG
CAAATGACTTGGCACATCCCTCTTTGATGACCTCCAAGTCATCAGATATG
ACCACAGATCCATCGGCTGCAATTCCCCAGTACAGCTTCACTCCCCCATC
AGAACCCAGAGCAGTGAAGACCGTGCCGGCCTTGCTATCGTAGACCACAA
AAGCAAAGCTCCCATCAAGATCCTTGACAACCTGGTCAGCTGGGTAAGGA
CCCCGGTCTCTGAGCGTACGATACGCCTCTATCACAAACATGGCCTCATC
GGTTCCCTTTGACAACCCATATTGCCTGATCAGCGAACACAAGTTGTTCA
AGGACCCCATGAACAGACAGTATATGTCCTCAAACCCGCAAAACAACCTT
CGGTCCTTGGTTAAAGGGGAGTGAGGGGGGACGTAAGCAAGAACAGCAGC
ATGGCCAAAGTTCATG
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