CB293899

Overview
NameCB293899
Unique NameCB293899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:578..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.674e-61
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GANVVAHGYTK  GLGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  165 GANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.728e-61
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN VAHGYTK  GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  165 GANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.360e-61
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN VAHGYTK  GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  164 GANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFK 283
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN VAHGYTK  GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  164 GANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GANVVA GYTK DGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  W+DHWIFWVGPFVGA LAA+YHQV+IRAIPFK
Sbjct:  167 GANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFK 286
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN VAHGYTK  GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  164 GANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.046e-59
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GANVVA GYTK DGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D  W+DHWIFWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  167 GANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 286
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GANVVA GYTK DGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D  W DHWIFWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  170 GANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 289
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GANVVA GYTK DGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+   WDDHWIFWVGPF+GA LAA+YHQVVIRAIPFK
Sbjct:  166 GANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285
[Close]
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN +AHGYTK  GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKD  WDDHW+FWVGPF+GA LAALYH +VIRAIPFK
Sbjct:  164 GANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFK 283
The following BLAST results are available for this feature:
BLAST of CB293899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
PIP15_ARATH1.674e-6193.33Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH3.728e-6193.33Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH6.360e-6193.33Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_VICFA5.384e-6091.67Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ORYSJ5.384e-6090.83Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_ARATH5.384e-6091.67Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_MAIZE2.046e-5989.17Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE2.672e-5989.17Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ2.672e-5990.00Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH2.672e-5989.17Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293899 ID=CB293899; Name=CB293899; organism=Citrus sinensis; type=EST; length=676bp
GCCCTAGGGTGCCAACGTCGTAGCTCATGGCTACACCAAGGCTGATGGTC
TTGGTGCCGAGATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCT
GCCACTGATGCCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGC
TCCTCTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACCATCC
CAATTACCGGAACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATC
ATCTACAACAAGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGG
ACCATTCGTTGGAGCTGGACTTGCAGCTTTGTACCACCAAGTCGTGATCA
GAGCCATTCCCTTCAAATGAAGCTGATCGCTTCATCGACGTTCGTGATTG
CACCTGCATTTGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAA
ATATTAATTAGTCCTTTGTTCAAATCTGCTGGTGCTGGACCTGGACCTGC
TTCTGTGTTTTCCTTCCTTAAAACGTTTTTTTTTTTTTTTTGAAGAGAGG
TCGATGATGATGACGGATGGGCCCATGGCTAAGTAGGTGGGCGCTGTCAC
TTTGTACATTTGTATGGCTGTGGATTTGTGCAATGTCATCTTGGTAATAA
TATGGACAAAACTAGTTCTATTACTT
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