CB293904

Overview
NameCB293904
Unique NameCB293904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293904_ssr130 microsatellite CB293904_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:76..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 472.241 bits (1214), Expect = 1.167e-132
Identity = 228/233 (97.85%), Postives = 230/233 (98.71%), Query Frame = 1
Query:   10 LLVALAGIADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            LLVALAGIADG+RDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYS HGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATTASNA
Sbjct:   12 LLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATTASNA 244          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 9.017e-101
Identity = 179/233 (76.82%), Postives = 199/233 (85.41%), Query Frame = 1
Query:   10 LLVALAGIADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            LLV+L  ++   R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYS HGGPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA
Sbjct:   17 LLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 243          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.207e-98
Identity = 169/233 (72.53%), Postives = 193/233 (82.83%), Query Frame = 1
Query:   10 LLVALAGIADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            ++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVDSGPNDHIF++Y+ HGGPGVLGMP   Y+YA +L +VLKKKHASG YKSLVFYLEACESGSIFEGLLP+ LNIYATTASNA
Sbjct:   14 IVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPDDLNIYATTASNA 240          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 5.120e-96
Identity = 168/219 (76.71%), Postives = 193/219 (88.13%), Query Frame = 1
Query:   52 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AVILGNKTAL GGSGKVVDSGPNDHIFI+YS HGGPGVLGMPTS  +YA++L DVLKKK+ASG YKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 228          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.490e-95
Identity = 169/233 (72.53%), Postives = 191/233 (81.97%), Query Frame = 1
Query:   10 LLVALAGIADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+SGPNDHIFIFYS HGGPGVLG P   YIYA +L +VLKKKHASG YK+LVFYLEACESGSIFEGLLPE +N+YATTASNA
Sbjct:   14 LLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINVYATTASNA 233          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.066e-85
Identity = 145/193 (75.13%), Postives = 169/193 (87.56%), Query Frame = 1
Query:  130 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVDS PND IF++YS HGGPGVLGMP   Y+YA + I+VLKKKHA+G YK +V Y+EACESGSIFEG++P+ ++IY TTASNA
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEGIMPKDVDIYVTTASNA 246          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.311e-85
Identity = 152/238 (63.87%), Postives = 183/238 (76.89%), Query Frame = 1
Query:    7 WLLVALAGI----ADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            W++V L  +    A   R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAVILG+K+ L GGSGKV++S P D IFI+YS HGGPG+LGMP   Y+YA + IDVLKKKHASG+YK +V Y+EACESGS+FEG++P+ LNIY TTASNA
Sbjct:   19 WMMVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIYVTTASNA 244          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.311e-85
Identity = 144/191 (75.39%), Postives = 166/191 (86.91%), Query Frame = 1
Query:  136 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AVILG+K+ + GGSGKV++S P D IFIFYS HGGPGVLGMP + ++YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEGIMPKDLNIYVTTASNA 224          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.002e-83
Identity = 148/234 (63.25%), Postives = 180/234 (76.92%), Query Frame = 1
Query:    7 WLLVALAGIADGTRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            W+LV +  I          ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++S P D IF++YS HGGPGVLGMP   Y+YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA
Sbjct:   21 WMLVMVMRIQGTNGKEQDSVIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNA 242          
BLAST of CB293904 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 302.753 bits (774), Expect = 1.224e-81
Identity = 136/194 (70.10%), Postives = 165/194 (85.05%), Query Frame = 1
Query:  127 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSHHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNA 708
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+ S PNDHIF++Y+ HGGPGVLGMP + +IYA + I+ LKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNA 235          
The following BLAST results are available for this feature:
BLAST of CB293904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VPE_CITSI1.167e-13297.85Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH9.017e-10176.82Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA3.207e-9872.53Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEA_ARATH5.120e-9676.71Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE1_PHAVU1.490e-9572.53Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPE_RICCO4.066e-8575.13Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
VPE_SOYBN5.311e-8563.87Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
LEGU_CANEN5.311e-8575.39Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE2_PHAVU1.002e-8363.25Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH1.224e-8170.10Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06de12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293904 ID=CB293904; Name=CB293904; organism=Citrus sinensis; type=EST; length=709bp
CGCACTTGGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAACCAGAGA
CATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCC
ATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGC
ACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAG
GCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGGC
TGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAAT
GAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATGA
TGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGTTG
AAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGGGGC
AGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTCTA
CTCACATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATACA
TATATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGGG
AACTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGTAT
CTTTGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAACCACAGCTT
CAAATGCTG
back to top