CB293921

Overview
NameCB293921
Unique NameCB293921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293921_ssr354 microsatellite CB293921_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2047 contig Csv1_Contig2047:97..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.539e-84
Identity = 144/164 (87.80%), Postives = 156/164 (95.12%), Query Frame = -2
Query:  197 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMVEGAPLETVTPIPYDVVNDFKGGY 688
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHV  SRC+EEFKLRKK+ND LKAD KARGE ISTKRQPKGPKPGFMVEG  LETVTPIPYDVVND KGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 2.625e-84
Identity = 144/164 (87.80%), Postives = 155/164 (94.51%), Query Frame = -2
Query:  197 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMVEGAPLETVTPIPYDVVNDFKGGY 688
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHV  SRC+EEFKLRKKKNDELKA  KA GE ISTKRQPKGPKPGFMVEG  LETVTPIPYDVVND KGGY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.008e-43
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = -2
Query:  224 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVK-ARGEVISTKRQPKGPKPGFMV--EGAPLETVTPIPYD 688
            MP  +G R+RTR LFAR F+  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGRTG VWNVTKRA+GVEINK+V +RIIKKRIHVR++HV  S C + F  R K+ND++K D   A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct:    1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 82/157 (52.23%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  224 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMV--EGAPLETVTPIPYD 688
            M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH+  S+C +EF  R K N   +A+ KA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  224 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMV--EGAPLETVTPIPYD 688
            M   HG RSRTR +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH+  S+C +EF  R K N   +A+ KA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.611e-41
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = -2
Query:  218 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMVEGAPLE--TVTPIPYDVV 688
            MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV PS        R ++N +   + K  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:    1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 81/157 (51.59%), Postives = 110/157 (70.06%), Query Frame = -2
Query:  224 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMVEGAPLETVT--PIPYD 688
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV  S+C ++F  R K N+  + + KA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 81/157 (51.59%), Postives = 110/157 (70.06%), Query Frame = -2
Query:  224 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMVEGAPLETVT--PIPYD 688
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV  S+C ++F  R K N+  + + KA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 76/152 (50.00%), Postives = 103/152 (67.76%), Query Frame = -2
Query:  224 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMV--EGAPLETVTPIPYD 673
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH+  S+  + F  R K+ND+ K + K +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB293921 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = -2
Query:  224 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAMGVEINKQVGNRIIKKRIHVRVEHVHPSRCSEEFKLRKKKNDELKADVKARGEVISTKRQPKGPKPGFMV--EGAPLETVTPIPYD 673
            G R  TR +F+RP+RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH+  S+  + F  R K+ND+ K + K +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
The following BLAST results are available for this feature:
BLAST of CB293921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL212_ARATH1.539e-8487.8060S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH2.625e-8487.8060S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA5.008e-4358.2360S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21A_YEAST3.246e-4252.2360S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21B_YEAST7.231e-4251.5960S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_DICDI1.611e-4152.2060S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21B_SCHPO1.781e-4051.5960S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO1.781e-4051.5960S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21_HUMAN3.714e-3850.0060S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA8.273e-3849.3460S ribosomal protein L21 OS=Chinchilla lanigera G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06df09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293921 ID=CB293921; Name=CB293921; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTTTTTTTTGCAACGGAAAACATCTTTTGGTTTCTATATAAA
ATGAAGATTAAAAATAAACATCTCTGCAATTGCAGTTCCTCTCCAAAAAC
AAAACTAATAAGGATGAAAATACATCCAAATAAGACCATGTCCAAAAAAG
TCTGCAACAAGTAACAAAACAGCAACAATACCAAAAAGATAACCTAGTAA
CCACCCTTAAAATCATTGACGACATCATAAGGAATAGGAGTGACAGTTTC
CAATGGTGCACCTTCCACCATGAAACCTGGTTTAGGGCCCTTTGGCTGCC
TCTTTGTACTGATGACCTCACCTCTTGCCTTAACATCTGCCTTGAGCTCA
TCATTCTTCTTCTTCCTCAGCTTGAACTCCTCGGAACACCTTGAAGGGTG
AACATGCTCCACACGAACATGAATCCTCTTCTTGATGATCCTGTTACCAA
CCTGCTTGTTAATCTCCACCCCCATGGCGCGCTTGGTGACATTCCAAACA
CGGCCTGTACGCCCATGGTAAAACTTGTGGGGCATACCTTTGTGAACGGC
GCCGTTCACTTTGACGTCAACGTAATCGCCGATTTTGTAAGTCCTAAGGT
AAGTGGACAAGGGGATGTAACCCTTCTTTCTGAAGGGGCGTGCGAACAAA
TCCCTTGTTCGGGACCTCAAACCGTGACCTGCCGGCATGTTTGAGTACTC
TGCTCCTTTTTTC
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