CB293925

Overview
NameCB293925
Unique NameCB293925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2756 contig Csv1_Contig2756:1799..2652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293925 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.482e-77
Identity = 137/177 (77.40%), Postives = 151/177 (85.31%), Query Frame = -1
Query:  325 ITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKREPQKDD 855
            ITENGVSDETDLIR+PY++EHLLA YAA+I GV V+GYLFWT SDNWEWADGYGPKFGLVAVDRANNLAR PRPSY LF++VVTTGK+TR+DR  AW ELQ AA QKKTRPF+RAV+KHG MYAGGLD P QRP+I RDWRFGHY+MEGLQDPLS   RCI  PFS  KK    +DD
Sbjct:  464 ITENGVSDETDLIRKPYILEHLLATYAAIIMGVRVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARKPRPSYFLFSRVVTTGKITRQDRMSAWRELQQAAVQKKTRPFFRAVDKHGRMYAGGLDRPIQRPFILRDWRFGHYKMEGLQDPLSCFIRCIFAPFSRQKKIHYIEDD 640          
BLAST of CB293925 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.404e-72
Identity = 130/189 (68.78%), Postives = 156/189 (82.54%), Query Frame = -1
Query:  304 ITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKR-----EPQKDDAELVVQP 855
            +TENGVSDETD+IRRPY+IEHLLA+YAAM+ GVPV+GY+FWTISDNWEWADGYGPKFGLVAVDR+++LAR  R SYHLF+K+V +GKVTR+DR+ AW+ELQ AAK  K RPFYR V+ H LMYA GLD+P  RP++ RDWRFGHYQM+GLQDPLSR++R +L    I+KKR         DDA LV+ P
Sbjct:  427 VTENGVSDETDVIRRPYLIEHLLALYAAMLKGVPVLGYIFWTISDNWEWADGYGPKFGLVAVDRSHDLARTLRQSYHLFSKIVKSGKVTRKDRSLAWNELQKAAKAGKLRPFYRGVDNHNLMYADGLDKPQWRPFVDRDWRFGHYQMDGLQDPLSRVARTLLIWPLIMKKRIRKVKIKHTDDAGLVLHP 615          
BLAST of CB293925 vs. ExPASy Swiss-Prot
Match: BGAL_SULSO (Beta-galactosidase OS=Sulfolobus solfataricus GN=lacS PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  583 ITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTRE 855
            +TENG++D+ D  R  Y++ H+  V+ A+ +G  V GYL W+++DN+EWA G+  +FGL+ VD  N      RPS  ++ ++ T G +T E
Sbjct:  385 VTENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNYEWASGFSMRFGLLKVD-YNTKRLYWRPSALVYREIATNGAITDE 474          
BLAST of CB293925 vs. ExPASy Swiss-Prot
Match: BGAL_SULSH (Beta-galactosidase OS=Sulfolobus shibatae GN=bglY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  583 ITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTRE 855
            +TENG++D+ D  R  Y++ H+  V+ A+ +G  V GYL W+++DN+EWA G+  +FGL+ VD         RPS  ++ ++ T G +T E
Sbjct:  385 VTENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNYEWASGFSMRFGLLKVDYGTK-RLYWRPSALVYREIATNGGITDE 474          
BLAST of CB293925 vs. ExPASy Swiss-Prot
Match: BGAL_SULAC (Beta-galactosidase OS=Sulfolobus acidocaldarius GN=bgaS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = -1
Query:  667 ITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVD 855
            + ENG++D+ D  R  Y++ H+  V+ A+  GV V GYL W+++DN+EW+ G+  +FGL+ VD
Sbjct:  387 VMENGIADDADYQRPYYLVSHIYQVHRALNEGVDVRGYLHWSLADNYEWSSGFSMRFGLLKVD 449          
The following BLAST results are available for this feature:
BLAST of CB293925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SFR2_ORYSJ2.482e-7777.40Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH2.404e-7268.78Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
BGAL_SULSO5.095e-1439.56Beta-galactosidase OS=Sulfolobus solfataricus GN=l... [more]
BGAL_SULSH1.936e-1338.46Beta-galactosidase OS=Sulfolobus shibatae GN=bglY ... [more]
BGAL_SULAC5.273e-1142.86Beta-galactosidase OS=Sulfolobus acidocaldarius GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06df11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06df11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293925 ID=CB293925; Name=CB293925; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTTTTTTTTAAAGGAAATCTACAGAGGGAACTGTTATATATT
AAGATGATTTCTTACATTTGTAATTTGTTTTCCAAATTAATTATTTATAC
AACATTTCATTTGCATCATTTCTAAGAAAAATAACCAAATCTGTTTCAAT
AATATATGACCGCCAGGTGCCAACATCCTTATGAACATCATTTATCTGTT
GCAACAGATACCTTTAAGCAATTGAATCATGTCCTCGGTAGCTTCAGAGA
AGGAAATCATAAAGATCGCCAGCAGAGATAGGCACTTAAATACTGAATTG
AAGAGGTTGGACAACCAATTCAGCATCATCCTTCTGAGGTTCTCTTTTCT
TTATAATAGAGAATGGTCTCAAAATGCATCTTGATAAGCGGCTTAGTGGG
TCCTGCAGACCTTCCATCTGATAGTGTCCAAACCGCCAATCTCGTTGGAT
ATAAGGCCGTTGAGTTGGTTCATCAAGGCCTCCTGCATACATCAATCCAT
GTTTATTAACTGCCCGATAGAACGGTCGTGTCTTTTTTTGTTTAGCAGCT
AATTGAAGTTCACTCCATGCACGTGCTCGGTCTTCACGTGTGACTTTACC
AGTAGTGACTACCTTGGTAAATAGATGGTACGAAGGACGAGGAATGCGGG
CAAGATTGTTTGCCCGGTCCACTGCAACGAGTCCAAACTTGGGACCATAC
CCATCAGCCCATTCCCAATTGTCAGAAATAGTCCAAAAAAGATAACCAAT
CACAGGGACACCTGTAATCATGGCAGCATAAACAGCAAGCAAATGTTCTA
TAACATATGGTCGACGAATCAGATCTGTCTCATCAGAAACCCCATTTTCT
GTTAT
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