CB293927

Overview
NameCB293927
Unique NameCB293927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1091..1972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.055e-105
Identity = 185/223 (82.96%), Postives = 206/223 (92.38%), Query Frame = -1
Query:  217 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTDD 882
            EI+RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYF   +EEYVEIPSDSGITFNVQPKMKALEIAE+A+ AILS +F QVRVNLPNSDMVGHTGDIEATVVACKAADEAVK+IIDAIE+VGGIY++TADHGNAEDMVKR+K G+P + K+GNIQ+LTSHTL+PVPIAIGGPGL   V+FR D+P GGLANVAAT +NLHG+EAPSDYEP+LIEV  +
Sbjct:  337 EIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFKPEMEEYVEIPSDSGITFNVQPKMKALEIAEKARDAILSGKFDQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKMIIDAIEQVGGIYVITADHGNAEDMVKRDKKGQPAMDKNGNIQILTSHTLEPVPIAIGGPGLTPGVRFRNDIPTGGLANVAATVMNLHGFEAPSDYEPTLIEVVSN 559          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.921e-104
Identity = 185/223 (82.96%), Postives = 206/223 (92.38%), Query Frame = -1
Query:  217 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTDD 882
            EIDRTSGEYL +NGVRTFACSETVKFGHVTFFWNGNRSGYF+  +EEYVEIPSDSGITFNVQPKMKA+EIAE+ + AILS++F QVRVNLPNSDMVGHT  IEATVVACKAADEAVKIIIDAIE+VGGIY+VTADHGNAEDMVKRNK G+PLL K+GNIQ+LTSHTL+PVPIAIGGPGL   V+FR D+PNGGLANVAAT +NLHG+EAP+DYE +LIEV D+
Sbjct:  266 EIDRTSGEYLTYNGVRTFACSETVKFGHVTFFWNGNRSGYFNPQMEEYVEIPSDSGITFNVQPKMKAVEIAEKGRGAILSKKFEQVRVNLPNSDMVGHTSSIEATVVACKAADEAVKIIIDAIEQVGGIYVVTADHGNAEDMVKRNKKGQPLLDKNGNIQILTSHTLQPVPIAIGGPGLAPGVQFRKDVPNGGLANVAATVMNLHGFEAPADYETTLIEVVDN 488          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 1.377e-102
Identity = 179/223 (80.27%), Postives = 203/223 (91.03%), Query Frame = -1
Query:  217 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTDD 882
            EI+RTSGEYLVHNGV TFACSETVKFGHVTFFWNGNRSGYF+  +EEYVEIPSD GITFNVQPKMKA+EIAE+A+ AILS +F QVRVN+PN DMVGHTGD+EATVV CKAADEAVK+IIDAIE+VGGIY+VTADHGNAEDMVKR+KSG+P+  K G IQ+LTSHTL+PVPIAIGGPGL   V+FR+D+P GGLANVAAT +NLHG+EAPSDYEP+LIE  D+
Sbjct:  334 EIERTSGEYLVHNGVHTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDVGITFNVQPKMKAIEIAEKARDAILSGKFQQVRVNIPNGDMVGHTGDVEATVVGCKAADEAVKMIIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPMADKSGKIQILTSHTLQPVPIAIGGPGLTPGVRFRSDIPTGGLANVAATVMNLHGFEAPSDYEPTLIEAVDN 556          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.798e-102
Identity = 184/223 (82.51%), Postives = 201/223 (90.13%), Query Frame = -1
Query:  217 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTDD 882
            EI R SGEYLV NGVRTFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGITFNV+PKMKALEIAER + AILS +F QVRVNLPN DMVGHTGDI+AT+ ACK+ADEAVK+I++AIE+VGGIYLVTADHGNAEDMVKRNK GEP L K+GNIQ+LTSHT +PVPIAIGGPGL   V+FR DLP GGLANVAATF+NLHG EAPSDYEPSLIEV D+
Sbjct:  337 EIARHSGEYLVRNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGITFNVKPKMKALEIAERTRDAILSGKFDQVRVNLPNGDMVGHTGDIKATIEACKSADEAVKMILEAIEQVGGIYLVTADHGNAEDMVKRNKKGEPALDKNGNIQILTSHTCEPVPIAIGGPGLAPGVRFRQDLPTGGLANVAATFMNLHGSEAPSDYEPSLIEVVDN 559          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 3.391e-101
Identity = 180/223 (80.72%), Postives = 201/223 (90.13%), Query Frame = -1
Query:  217 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTDD 882
            EIDRTSGEYLV NG+RTFACSETVKFGHVTFFWNGNRSGYFD+  EEYVE+PSDSGITFNV P MKALEIAE+A+ A+LS +F QVRVNLPN DMVGHTGDIEATVVACKAADEAVKII+DA+E+VGGIYLVTADHGNAEDMVKRNKSG+PLL K+  IQ+LTSHTL+PVP+AIGGPGL   VKFR D+   GLANVAAT +NLHG+EAP+DYE +LIEV D+
Sbjct:  337 EIDRTSGEYLVKNGIRTFACSETVKFGHVTFFWNGNRSGYFDATKEEYVEVPSDSGITFNVAPNMKALEIAEKARDALLSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADEAVKIILDAVEQVGGIYLVTADHGNAEDMVKRNKSGKPLLDKNDRIQILTSHTLQPVPVAIGGPGLHPGVKFRNDIQTPGLANVAATVMNLHGFEAPADYEQTLIEVADN 559          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 6.395e-100
Identity = 179/221 (81.00%), Postives = 199/221 (90.05%), Query Frame = -1
Query:  220 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTD 879
            IDRTSGEYL HNGVRTFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGI+FNVQPKMKALEIAE+A+ AILS +F QVRVNLPN DMVGHTGDIEATVVAC+AAD AV+ I+DAIE+VGGIY+VTADHGNAEDMVKR+KSG+P L K+GN+Q+LTSHTLKPVPIAIGGPGL   V+FR D+   GLANVAAT +NLHG+ APSDYE SLIEV +
Sbjct:  339 IDRTSGEYLAHNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACEAADRAVRTILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPALDKEGNLQILTSHTLKPVPIAIGGPGLSAGVRFRQDIETPGLANVAATVMNLHGFVAPSDYETSLIEVVE 559          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 1.575e-98
Identity = 177/222 (79.73%), Postives = 197/222 (88.74%), Query Frame = -1
Query:  220 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEVTD 882
            EIDRTSGEYL HNGV TFACSETVKFGHVTFFWNGNRSGYF+  LEEYVEIPSDSGI+FNVQPKMKALEI E+A+ AILS +F QVRVN+PN DMVGHTGDIEATVVAC+AAD AVK+I DAIE+V GIY+VTADHGNAEDMVKR+KSG+P L K+G +Q+LTSHTLKPVPIAIGGPGL   V+FR DL   GLANVAAT +NLHG+ APSDYEP+LIEV +
Sbjct:  336 EIDRTSGEYLTHNGVSTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIGEKARDAILSGKFDQVRVNIPNGDMVGHTGDIEATVVACEAADLAVKMIFDAIEQVKGIYVVTADHGNAEDMVKRDKSGKPALDKEGKLQILTSHTLKPVPIAIGGPGLAQGVRFRKDLETPGLANVAATVMNLHGFVAPSDYEPTLIEVVE 557          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.012e-49
Identity = 111/219 (50.68%), Postives = 142/219 (64.84%), Query Frame = -1
Query:  229 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD--GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIE 879
            IDRT GEY+  + +  +A SET K+GHVT+FWNGN+SGYFD N EEY EI SD  I F+  P+MKAL I E  +KA+   +    RVN  N DMVGHTG+  ATV A +  D  V+ +    EK   + LVTADHGNA++M + +K G  + KD  GN    TSHTL PVPI+I  P   + ++F + L N GLANVAAT +++ GYE P  Y PSLI+
Sbjct:  335 IDRTLGEYMASSNIPQYALSETQKYGHVTYFWNGNKSGYFDQNSEEYREILSDV-IPFDQSPEMKALLITEALEKALNENKQDFYRVNYANGDMVGHTGNYLATVQAMEFLDGCVERLWKTCEKQNIVLLVTADHGNADEMFQLDKKGN-VEKDSHGNPIPKTSHTLNPVPISILDP--ENKIRFNSKLSNPGLANVAATILDVMGYETPEGYHPSLIQ 549          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.012e-49
Identity = 111/219 (50.68%), Postives = 142/219 (64.84%), Query Frame = -1
Query:  229 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD--GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIE 879
            IDRT GEY+  + +  +A SET K+GHVT+FWNGN+SGYFD N EEY EI SD  I F+  P+MKAL I E  +KA+   +    RVN  N DMVGHTG+  ATV A +  D  V+ +    EK   + LVTADHGNA++M + +K G  + KD  GN    TSHTL PVPI+I  P   + ++F + L N GLANVAAT +++ GYE P  Y PSLI+
Sbjct:  335 IDRTLGEYMASSNIPQYALSETQKYGHVTYFWNGNKSGYFDQNSEEYREILSDV-IPFDQSPEMKALLITEALEKALNENKQDFYRVNYANGDMVGHTGNYLATVQAMEFLDGCVERLWKTCEKQNIVLLVTADHGNADEMFQLDKKGN-VEKDSHGNPIPKTSHTLNPVPISILDP--ENKIRFNSKLSNPGLANVAATILDVMGYETPEGYHPSLIQ 549          
BLAST of CB293927 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.150e-32
Identity = 88/208 (42.31%), Postives = 114/208 (54.81%), Query Frame = -1
Query:  256 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 879
            ++   GEYL  NG      +ET K+ HVTFF++G R   F+   EE + IPS    T+++QP+M A E+ +R  +AI  +RF  + VN  N DMVGHTG  EA V A +A D  V  I+DA+EKVGG  L+TADHGN E M                Q  T+HT +PVP    G     +VK R     G LA+VA T + L G E P
Sbjct:  310 LNNVLGEYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDALEKVGGEALITADHGNVEQMEDECTG----------QAHTAHTTEPVPFIYVG---KRNVKVR---EGGVLADVAPTMLKLLGLEKP 499          
The following BLAST results are available for this feature:
BLAST of CB293927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
PMGI_MESCR5.055e-10582.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU1.921e-10482.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_RICCO1.377e-10280.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_TOBAC1.798e-10282.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE3.391e-10180.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH6.395e-10081.00Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMG1_ARATH1.575e-9879.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN3.012e-4950.68Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC3.012e-4950.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP11.150e-3242.312,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06df12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06df12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293927 ID=CB293927; Name=CB293927; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTCAACAAAATAAATTTTGAGCTATATTGCCCTGTCTGC
CTCCAACAGACAGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCA
AAATGAATTCAAGACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGG
AATTCCTCCGGAGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGG
CGTCAGTTACTTCTCAGTCGTCAGTTACTTCAATAAGACTTGGCTCGTAG
TCACTAGGCGCCTCATATCCATGGAGATTGATAAAAGTTGCTGCTACATT
GGCCAGCCCACCATTAGGGAGATCTGTGCGGAACTTGACATCATCTGGCA
GTCCAGGACCTCCGATTGCAATGGGAACGGGTTTAAGAGTGTGAGACGTG
AGCACTTGAATATTGCCATCCTTAAGAAGAGGCTCCCCAGATTTGTTCCT
CTTGACCATGTCCTCAGCATTGCCATGATCTGCAGTAACAAGATATATTC
CACCAACTTTCTCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCA
GCCTTGCATGCCACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCAT
GTCACTATTTGGTAGGTTAACACGCACCTGGTGGAACCTGCGACTAAGGA
TGGCCTTCTTTGCCCTTTCAGCAATCTCCAAAGCCTTCATCTTGGGCTGT
ACATTGAAAGTAATTCCAGAATCACTAGGAATTTCCACATATTCCTCCAA
ATTCGAGTCGAAATACCCAGAGCGGTTTCCATTCCAGAAGAAAGTGACAT
GTCCAAACTTGACAGTCTCACTGCAAGCAAAAGTCCGGACACCATTATGC
ACTAAATATTCACCAGATGTTCTGTCTATCTC
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