CB293928

Overview
NameCB293928
Unique NameCB293928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:166..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 421.394 bits (1082), Expect = 2.390e-117
Identity = 201/237 (84.81%), Postives = 222/237 (93.67%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE KPD+YNCI VA+TPTMDSFKK+AP RWRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ GTLHLIGLLSDGGVHSRLDQLQLLLKGA+E GAKRIR+H+LTDGRDV+DG+SVGF ET+EKDL  LR KGVDAQ+ASGGGRMYVTMDRYENDW+VVKRGWDAQVLGEAP+KF SAVEA+KKLRE+P ANDQYLPPFVIVDEN
Sbjct:   28 GEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAETLEKDLENLREKGVDAQVASGGGRMYVTMDRYENDWNVVKRGWDAQVLGEAPYKFKSAVEAIKKLREEPKANDQYLPPFVIVDEN 264          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.110e-114
Identity = 200/237 (84.39%), Postives = 218/237 (91.98%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE   ++YNCI VA+TPTMDS K+ AP +WRL+RAHG AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLAL SGKIY  EGFNYIK SFET TLHLIGLLSDGGVHSRLDQLQLLLKG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA+LR KGVDAQIASGGGRMYVTMDRYENDW VVKRGWDAQVLGEAP+KF +AVEAVK LR++P ANDQYLPPFV+VDE+
Sbjct:   31 GEASANQYNCIHVAETPTMDSLKQGAPEKWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAQLRAKGVDAQIASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPYKFKNAVEAVKTLRQEPKANDQYLPPFVVVDES 267          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.230e-114
Identity = 199/237 (83.97%), Postives = 216/237 (91.14%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE  PD+YNCI VA TP MDS K  AP +WRL++AHG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKIY  +GFNYIK SFE+GTLHLIGLLSDGGVHSRLDQLQLLLKG SERGAK+IR+HILTDGRDVLDGSS+GFVET+E DL ELR KGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAP+KF SA+EAVK LR QP ANDQYLPPFVIVD++
Sbjct:   31 GEANPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDGRDVLDGSSIGFVETLENDLLELRAKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPYKFKSALEAVKTLRAQPKANDQYLPPFVIVDDS 267          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.343e-111
Identity = 195/237 (82.28%), Postives = 211/237 (89.03%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE  PD+YNCI  A TP MDS K   P  WRL++AHG+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE GT+HLIGLLSDGGVHSRLDQ+QLLLKG +ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA LR KGVDAQ+ASGGGRMYVTMDRYENDW VVKRGWDAQVLGEAPHKF SA+EAVK LR +P ANDQYLP FVIVD+N
Sbjct:   32 GESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLAALRAKGVDAQVASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPHKFKSALEAVKTLRAEPGANDQYLPSFVIVDDN 268          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.447e-111
Identity = 192/237 (81.01%), Postives = 214/237 (90.30%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE KP+++N I VA+TP M S K  AP +WRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIY+ EGF Y+K  FE GTLHLIGLLSDGGVHSRLDQ+QLLLKGA++ GAKRIR+H LTDGRDVLDGSSVGF+ET+E  LA+LR KG+DAQ+ASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKF   VEAVKKLR++PNANDQYL PFVIVD+N
Sbjct:   31 GEAKPNEFNAIHVAETPVMYSLKNGAPEKWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMETLENSLAQLREKGIDAQVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKDPVEAVKKLRQEPNANDQYLAPFVIVDDN 267          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 393.66 bits (1010), Expect = 5.337e-109
Identity = 190/237 (80.17%), Postives = 210/237 (88.61%), Query Frame = 2
Query:    8 GEFKPDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            GE  PD+YNCI  A TP MDS K  AP  W L++AHG+AVGLP+EDDMGNSEVGHNALGAGRIFAQGAKL D ALASGKI++ EGF Y+  SFET TLHL+GLLSDGGVHSRLDQLQLL+KG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DL  LR  GVDAQIASGGGRMYVT+DRYENDW+VVKRGWDAQVLGEAPHKF +AVEAVK LR++P ANDQYLPPFVIVDE+
Sbjct:   30 GESAPDQYNCIHNAPTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLVALRENGVDAQIASGGGRMYVTLDRYENDWEVVKRGWDAQVLGEAPHKFKNAVEAVKTLRKEPGANDQYLPPFVIVDES 266          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.411e-93
Identity = 168/196 (85.71%), Postives = 180/196 (91.84%), Query Frame = 2
Query:  131 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVDEN 718
            LPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL +GK+Y+ EGF YIK SF T TLHLIGLLSDGGVHSRLDQL LL+KGASERGAKRIR+HILTDGRDVLDGSSVGF ET+E  LA+LR KGVDAQIASGGGRMYVTMDRYENDW VVKRGWDAQVLGEAPHKF +AVEA+K LR++PN +DQYLPPFVIVDEN
Sbjct:    1 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDGGVHSRLDQLLLLVKGASERGAKRIRVHILTDGRDVLDGSSVGFAETLENYLAQLREKGVDAQIASGGGRMYVTMDRYENDWGVVKRGWDAQVLGEAPHKFKNAVEAIKTLRQEPNTSDQYLPPFVIVDEN 196          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 113/234 (48.29%), Postives = 146/234 (62.39%), Query Frame = 2
Query:   20 PDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLR-EQPNANDQYLPPFVIVD 712
            P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR  G D +IASGGGRM +TMDRYE DW +V+RGW   V GE  + F+SA EA++  R E P   DQYLP FVI D
Sbjct:   33 PESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLDSLRKSGTDIRIASGGGRMTITMDRYEADWSMVERGWKVHVKGEGRY-FSSAKEAIETFRSENPKIIDQYLPSFVISD 263          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 113/234 (48.29%), Postives = 146/234 (62.39%), Query Frame = 2
Query:   20 PDKYNCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLR-EQPNANDQYLPPFVIVD 712
            P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR  G D +IASGGGRM +TMDRYE DW +V+RGW   V GE  + F+SA EA++  R E P   DQYLP FVI D
Sbjct:   33 PESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLNSLRKSGTDIRIASGGGRMTITMDRYEADWSMVERGWKVHVKGEGRY-FSSAKEAIETFRSENPKIIDQYLPSFVISD 263          
BLAST of CB293928 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 83/231 (35.93%), Postives = 130/231 (56.28%), Query Frame = 2
Query:   32 NCIPVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFNSAVEAVKKLREQPNANDQYLPPFVIVD 712
            N I  A TP +D  +K  P  +  L   G AVGLP +  MGNSEVGH  +GAGR+  Q    +++++ +G  +++    +  + +K      +LHL+GL+S GGVHS +  L  L+K A E+G K++ +H+  DGRDV   +++G V    K+L     +    +IA+  GR Y  MDR +  W+  K  +DA  LG AP+K + AV AV +  E+    D+++ P ++ D
Sbjct:   31 NAILAASTPHLDRLQKERPSCF--LETSGEAVGLP-QGQMGNSEVGHLNIGAGRVVYQDLTKINVSIRNGDFFENPVLLDAISNVK--LNNSSLHLMGLVSYGGVHSHMTHLYALIKLAQEKGLKKVYIHVFLDGRDVPPKAALGDV----KELDAFCKENQSVKIATVQGR-YYAMDR-DKRWERTKLAYDALTLGVAPYKTSDAVTAVSEAYER-GETDEFIKPTIVTD 249          
The following BLAST results are available for this feature:
BLAST of CB293928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
PMGI_RICCO2.390e-11784.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR1.110e-11484.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE3.230e-11483.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH3.343e-11182.28Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMGI_TOBAC7.447e-11181.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG1_ARATH5.337e-10980.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU1.411e-9385.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN3.516e-5248.29Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC3.516e-5248.292,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA4.941e-3035.932,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06df12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06df12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293928 ID=CB293928; Name=CB293928; organism=Citrus sinensis; type=EST; length=718bp
GCACTAGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCCTGTCGCCG
ACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGG
TTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACAT
GGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTG
CTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTAT
CAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATT
GCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATC
AACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATT
CGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGT
AGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAG
GTGTTGACGCGCAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGATG
GACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCCCA
AGTTCTTGGAGAAGCTCCACACAAGTTTAACAGCGCCGTTGAAGCTGTCA
AAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTT
GTCATTGTTGATGAAAAT
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