CB293959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.640e-36 Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = -3 Query: 205 VNRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQRXXXXXXXXXXXXXXXLVKVCP 819 V RVW +LK +P N +SYL +L+AL+KL+ ID +K+ F EWES C +YDMR+A+V I +YL+++MYEEA + K+R+ M++ L++ Q DLAL EAA+ + + +W + +FF FEE KDVDGAEEFCK L + L Y+LL+KTY+AAGK DM++R L K+CP Sbjct: 300 VYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAV--FNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQDK-NWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKICP 502
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.226e-33 Identity = 87/208 (41.83%), Postives = 117/208 (56.25%), Query Frame = -3 Query: 205 VNRVWGILKSTFPPTNT-SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEA--KQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQRXXXXXXXXXXXXXXXLVKVCP 819 V RVW LK P N SYLV+LQA++KL +D +K+ F EWES+C +YDMRLA++ I YL+ +MYEEA I K+R+ MI+ L + + DLA+ +EAA+S++ + W V FF FE+ KDVDGAE+FCK+L + LD + LIKTY AA K + DMR+R L VCP Sbjct: 332 VYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKI--LDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVCP 537
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21 Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = -3 Query: 268 VNRVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAK--QFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS-LNCLDFSAYSLLIKTYIAAGKLASDMRQR 819 V R+W L+ P T N +YL ++Q L KLN + + F+EW++ CS+YD+R+ +V+I AY Q+ + ++A + K+ E FM YY++S + AL M A+S K W P TV +FE++KDV+GAE ++LK+ + + + LI+TY AAGK MR+R Sbjct: 283 VYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL--KEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRR 468
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12 Identity = 47/167 (28.14%), Postives = 77/167 (46.11%), Query Frame = -3 Query: 316 RVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLI 813 RVW + KS P N Y L+ +L ++ I+ ++ +EEW SSYD R+ ++++ AY++ D E A + E + + R R + AL + A S +WRP + + FF+ EEE DV E ++L+ L+ +Y LI Sbjct: 331 RVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAE--GLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11 Identity = 43/184 (23.37%), Postives = 90/184 (48.91%), Query Frame = -3 Query: 277 DAVNRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 825 + V R+W + KS + +Y+ +L +L K ++ ++ F EWE++C +YD+R+++V++ AY++ +A + K+ E M +++ ++ A++ M ++ HWRP V +FE+E+ ++ A + + L L Y LL++ + A + A D+ Sbjct: 301 EGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESL--HGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDI 482 The following BLAST results are available for this feature:
BLAST of CB293959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293959 ID=CB293959; Name=CB293959; organism=Citrus sinensis; type=EST; length=827bpback to top |