CB293959

Overview
NameCB293959
Unique NameCB293959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.640e-36
Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = -3
Query:  205 VNRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQRXXXXXXXXXXXXXXXLVKVCP 819
            V RVW +LK  +P  N +SYL +L+AL+KL+ ID +K+ F EWES C +YDMR+A+V I +YL+++MYEEA  +               K+R+  M++ L++ Q DLAL   EAA+ +  + +W      + +FF  FEE KDVDGAEEFCK L   + L    Y+LL+KTY+AAGK   DM++R               L K+CP
Sbjct:  300 VYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAV--FNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQDK-NWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKICP 502          
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.226e-33
Identity = 87/208 (41.83%), Postives = 117/208 (56.25%), Query Frame = -3
Query:  205 VNRVWGILKSTFPPTNT-SYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEA--KQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDMRQRXXXXXXXXXXXXXXXLVKVCP 819
            V RVW  LK   P  N  SYLV+LQA++KL  +D +K+ F EWES+C +YDMRLA++ I  YL+ +MYEEA  I               K+R+  MI+ L + + DLA+  +EAA+S++   +  W      V  FF  FE+ KDVDGAE+FCK+L +   LD    + LIKTY AA K + DMR+R               L  VCP
Sbjct:  332 VYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKI--LDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVCP 537          
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = -3
Query:  268 VNRVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAK--QFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKS-LNCLDFSAYSLLIKTYIAAGKLASDMRQR 819
            V R+W  L+   P T N +YL ++Q L KLN +   +  F+EW++ CS+YD+R+ +V+I AY Q+ + ++A  +               K+ E FM YY++S  +  AL  M  A+S  K     W P   TV     +FE++KDV+GAE   ++LK+  + +    +  LI+TY AAGK    MR+R
Sbjct:  283 VYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL--KEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRR 468          
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12
Identity = 47/167 (28.14%), Postives = 77/167 (46.11%), Query Frame = -3
Query:  316 RVWGILKSTFPPT-NTSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLI 813
            RVW + KS  P   N  Y  L+ +L ++  I+  ++ +EEW    SSYD R+ ++++ AY++ D  E A                   + E   + + R R +  AL  +  A S     +WRP  + +  FF+  EEE DV   E   ++L+    L+  +Y  LI
Sbjct:  331 RVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAE--GLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495          
BLAST of CB293959 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 43/184 (23.37%), Postives = 90/184 (48.91%), Query Frame = -3
Query:  277 DAVNRVWGILKSTFPPTN-TSYLVLLQALAKLNAIDILKQCFEEWESRCSSYDMRLADVIIRAYLQKDMYEEAALIXXXXXXXXXXXXXXXKSRESFMIYYLRSRQLDLALNEMEAALSEAKQFHWRPMQVTVDTFFRFFEEEKDVDGAEEFCKVLKSLNCLDFSAYSLLIKTYIAAGKLASDM 825
            + V R+W + KS     +  +Y+ +L +L K   ++  ++ F EWE++C +YD+R+++V++ AY++     +A  +               K+ E  M  +++   ++ A++ M       ++ HWRP    V     +FE+E+ ++ A  + + L  L       Y LL++ +  A + A D+
Sbjct:  301 EGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESL--HGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDI 482          
The following BLAST results are available for this feature:
BLAST of CB293959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PP300_ARATH2.640e-3642.23Pentatricopeptide repeat-containing protein At4g01... [more]
PPR4_ARATH1.226e-3341.83Pentatricopeptide repeat-containing protein At1g02... [more]
PPR86_ARATH1.837e-2135.11Pentatricopeptide repeat-containing protein At1g60... [more]
PPR3_ARATH7.734e-1228.14Pentatricopeptide repeat-containing protein At1g02... [more]
PP400_ARATH1.319e-1123.37Pentatricopeptide repeat-containing protein At5g27... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06dh08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293959 ID=CB293959; Name=CB293959; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTTTTTTTGAGTAATAAAAAGTGAATTGATGAAACAGCCGTT
AACAGAGAGTCTTAATTTGCATGTGTTAAGACATGACCTGTTTCCAATTG
CTAGTTACAATTAAATGATGAAAATTACTGAACGTAAAATACACATCAAA
TAACAATACATCGAATTTTAGGGATTTGGTTCACACTCCAAACCTAACCT
AAGGAGGGCATACCTTTACAAGCAAGTCCTCAAGCTCATCAGTTATTTCA
ATATCATCATCCTCCAACCTCTGCCGCATGTCTGAGGCCAACTTTCCAGC
AGCTATATAAGTCTTTATCAACAAACTGTAGGCACTGAAATCAAGACAAT
TAAGTGATTTCAAGACCTTGCAGAACTCCTCTGCCCCATCAACATCTTTC
TCTTCCTCAAAGAACCTAAAAAATGTATCAACTGTTACTTGCATTGGGCG
CCAGTGAAATTGCTTGGCTTCAGACAAAGCTGCTTCCATTTCATTTAGAG
CCAAATCCAGCTGACGAGACCTCAGATAGTAAATCATGAAAGACTCCCGA
GACTTGAAAAATCGGGCGCTGGCATTAGCCCTTTTCTTAGCATTATTAAA
GATCAATGCAGCCTCCTCATACATATCCTTTTGTAAATAAGCACGTATAA
TGACATCTGCCAACCTCATATCATAACTGGAGCAACGGGACTCCCACTCC
TCAAAGCATTGTTTCAAGATGTCGATAGCATTGAGTTTAGCAAGAGCTTG
AAGCAGGACCAGATAGCTCGTATTTGTTGGGGGAAAAGTCGACTTCAGGA
TGCCCCATACACGATTGACCGCATCAA
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