CB293966

Overview
NameCB293966
Unique NameCB293966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293966 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 3 
Query:  348 GAGAAAPSLAFGSVSSDLAFLRPHGGAPP--SATGDSRFEGRERVRYTREQLMQVREAAVVADDILKIKREFESEGFGEEQIWGRAENN--------PPNQRQSRYSEPDNRDWR 662
            G    AP+ A  +  S   FLRPHGG     S  GD   E RERVRY+R+QL+ +R+   V + IL++++E E+E  G++Q W R ++N        P  Q Q+R++E DNRDWR
Sbjct:   21 GGRLFAPAFAVAASGSG-DFLRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWR 134
The following BLAST results are available for this feature:
BLAST of CB293966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT6.065e-1641.74Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293966 ID=CB293966; Name=CB293966; organism=Citrus sinensis; type=EST; length=670bp
GTCTCTCCTCGGAGAGAGAATTTCAATTACTCGTTTCTGTTTTCCTTATT
ACACACGAATATTATTAACTCTTCTCGCTCGCGGTCGCTTTCTCTCTCTC
CATATCTATATCTATATATATAAATATCCTCTGTCAGCGTTACAACAATC
GCGGCCGAGTCTTTTGTTATTATTATCATCTTCTTCGTTAAAAGTTTTGA
TTTGTTTTTGGACGGCGTAGATTGGATCGAGGTATGCATCAAGGAGATCA
GACGGTGTTGAGCTTGAGACCTGGCGGAGGACGCGGTGGTGCTGGCGGCG
GCGGAGGCGGAAATAGCAGATTGTTTAGCGGGTCTCGTTTTGATTCTGGA
GCTGGCGCTGCTGCTCCTTCTTTAGCTTTTGGCTCTGTCTCCTCGGATCT
CGCTTTCTTGCGTCCCCATGGCGGCGCCCCTCCTTCAGCGACTGGAGACT
CACGGTTTGAGGGTCGCGAGCGGGTGCGGTACACTCGAGAGCAGCTGATG
CAGGTCAGAGAGGCTGCTGTAGTAGCTGATGATATTCTCAAAATTAAACG
AGAATTTGAGTCGGAGGGCTTTGGTGAAGAACAAATCTGGGGACGTGCTG
AAAACAATCCGCCGAACCAACGTCAGAGCCGTTACTCTGAGCCAGATAAT
CGTGACTGGCGTCGTCCTGC
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