CB293980

Overview
NameCB293980
Unique NameCB293980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293980_ssr21 microsatellite CB293980_ssr21:21..34. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293980_ssr229 microsatellite CB293980_ssr229:229..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2487 contig Csv1_Contig2487:141..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293980 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 66/197 (33.50%), Postives = 83/197 (42.13%), Query Frame = 3 
Query:   81 EKKKFTTMALEALNSPTTSTHNHHPFRYEDSWTKRRRSKRPRTDESPQLXXXXXXXTEEEYMALCLIMLARGTTTANTAPAERTPTLAPEQKPLDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 635
            E+ +    A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   15 EQHQLDVEAAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CB293980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.191e-1833.50Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_03db10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03db10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293980 ID=CB293980; Name=CB293980; organism=Citrus sinensis; type=EST; length=637bp
GCACCATGATTTGAAATCACCTCTCTCTCTCTCTCGAAACTCAACAGATT
CAACCACAAGAGTCGAGAATTCACTAACAAGAAAAGAAAAAATTCACGAC
TATGGCTCTAGAAGCTCTAAACTCCCCTACAACAAGCACCCACAATCATC
ATCCGTTTAGATACGAAGACTCATGGACTAAAAGAAGGCGCTCAAAACGA
CCCCGTACCGACGAGTCCCCACAACTACCAGCAGCAGCAGCAGCTCCCAC
GGAAGAAGAGTACATGGCTCTCTGTCTCATCATGCTCGCCCGCGGTACCA
CCACCGCCAACACCGCTCCGGCCGAAAGAACCCCAACCCTGGCGCCGGAA
CAGAAGCCGCTGGATCAGTTCCCGGAGCCGCCAAGTTTGAAACTCTCTTA
CAAGTGCAGTGTGTGCAACAAGGCTTTCTCTTCGTACCAGGCCCTTGGTG
GGCACAAAGCCAGCCACCGCAAGAACGCTGCTGACGCCTCGGCTTCTCCC
AACGCCGCAGCCGCCAGTGACGTCACCCCACCACCGTCGGCAACGGCGAG
CAGCGGAAGCGGTGGTAGGACCCACGAGTGCTCTATTTGTCACAAGTCTT
TTCCCACGGGACAAGCTCTAGGAGGCCACAAGCGGTG
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