CB293985

Overview
NameCB293985
Unique NameCB293985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293985_ssr23 microsatellite CB293985_ssr23:23..50. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293985_ssr92 microsatellite CB293985_ssr92:92..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.002e-32
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL   G+TYCVV   SAGRQIPMAFL
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFL 82          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 8.483e-32
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYL   G+TYCVVA  SAGRQIPMAFL
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFL 82          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYL   G+TYCVVA  SAGRQIPM+FL
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFL 82          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.210e-31
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYL   G+TYCVVA  S GRQIPMAFL
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFL 147          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.162e-27
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN L   G+TYCVVA  SAGR+IPMAFL
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFL 82          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.391e-26
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLP-ASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP +SN+KFTYNCD HTFN+L   GY YCVVA  S  +QI +AFL
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFL 83          
BLAST of CB293985 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 2
Query:  188 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLGGGGYTYCVVADGSAGRQIPMAFL 433
            MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+L   G+ + VVAD S GR +P  FL
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFL 82          
The following BLAST results are available for this feature:
BLAST of CB293985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VA726_ARATH1.002e-3278.05Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH8.483e-3276.83Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH2.468e-3175.61Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA725_ARATH4.210e-3174.39Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA723_ARATH2.162e-2767.07Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH2.391e-2668.67Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH1.550e-2562.20Vesicle-associated membrane protein 727 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_04bh10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04bh10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293985 ID=CB293985; Name=CB293985; organism=Citrus sinensis; type=EST; length=434bp
GCACCATTGCTTTACTCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
GCGTAAAAAAGCAAAGCATAGCAACAAACAAAATTGGAGAGGAGAGAGAG
ACCTCTTGGAGCTTTAAAACAAAATAAAAAATAAAAACAAGCCCAGATCT
CATCGGGTCGGGGCTCAACTCAATTAGTCTCATCAAAATGAGCCAGAAAT
CGCTGATCTACGCCTTCGTGGCGCGCGGAAATGTTGTGCTTGCTGAGTAC
ACTGAGTTCAGTGGCAATTTCAACTCCATAGCCTATCAGTGCCTCCAGAA
ACTCCCTGCTTCCAACAACAAGTTCACCTACAACTGTGATGCTCACACCT
TCAATTATCTCGGGGGGGGGGGTTACACATATTGTGTGGTCGCAGATGGA
TCGGCCGGAAGACAAATACCGATGGCTTTTCTGG
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