CB293990

Overview
NameCB293990
Unique NameCB293990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293990_ssr96 microsatellite CB293990_ssr96:96..109. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293990_ssr115 microsatellite CB293990_ssr115:115..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:16..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.140e-67
Identity = 131/198 (66.16%), Postives = 156/198 (78.79%), Query Frame = 1
Query:  169 NNTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            N++  +    +A+ +P +   R+ YA   AILASMTSI LGYDIGVMSGA+++IKDDLK+SD ++EILMGILNIYSL+GS AAGRTSDW+GRRYTIV                TNY F+M GRFVAGIGVGYA++IAPVYTAE++PAS+RGFLTSFPE+FIN GILLGYVSNY FSKLP HL WR MLG+GA+PSV L
Sbjct:    2 NSSGVEQGVVIAESEPPRG-NRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFL 198          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.334e-67
Identity = 131/183 (71.58%), Postives = 144/183 (78.69%), Query Frame = 1
Query:  214 PQKKPKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            P K PKRN YA   AILASMTSI LGYDIGVMSGA +YIK DLK++D +I IL G LNIYSLIGS AAGRTSDWIGRRYTIV                 NYAFLM GRF+AGIGVGYAL+IAPVYTAE+SPAS+RGFL SFPEVFIN GI+LGYVSN  FS LPL + WR+MLGIGA+PSV+L
Sbjct:   26 PAKPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVIL 208          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.792e-66
Identity = 129/188 (68.62%), Postives = 151/188 (80.32%), Query Frame = 1
Query:  199 LADFDPQKKPKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            +A+ +P +   R+ +A   AILASMTSI LGYDIGVMSGAA++IKDDLK+SD ++EILMGILNIYSLIGS AAGRTSDWIGRRYTIV                TNY F+M GRFVAGIGVGYA++IAPVYT E++PAS+RGFL+SFPE+FIN GILLGYVSNY F+KLP H+ WR MLGIGA+PSV L
Sbjct:   12 VAESEPPRG-NRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFL 198          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.768e-52
Identity = 106/179 (59.22%), Postives = 131/179 (73.18%), Query Frame = 1
Query:  226 PKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            P  N +A G AI+AS+ SI  GYD GVMSGA ++I+DDLK++DT+IE+L GILN+ +L+GSL AG+TSD IGRRYTI                  NY  LM GR +AG+GVG+AL+IAPVY+AE+S AS RGFLTS PE+ I+ GILLGYVSNY F KL L L WR+MLGI A PS++L
Sbjct:   16 PHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLIL 194          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.951e-49
Identity = 101/189 (53.44%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  199 LADFDPQKKPKR-NLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            +AD    +KP   N +A   AI+AS+ SI  GYD GVMSGA ++I++DLK +D +IE+L GILN+ +L+GSL AGRTSD IGRRYTIV                 NY  L+ GR  AG+GVG+AL++APVY+AE++ AS RG L S P + I+ GILLGY+ NY FSKLP+H+ WR+MLGI A+PS++L
Sbjct:    1 MADQISGEKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSLVL 189          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 96/211 (45.50%), Postives = 135/211 (63.98%), Query Frame = 1
Query:  142 AAGLGTESNN----NTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVLL 762
            A  +G + N     ++D +  +   + + +    R  Y    A  AS+ ++ LGYD+GVMSGA L+I+ DLK+++ + E+L+G L+I SL GSLA GRTSD IGR++T+                  ++  LM GR +AGIG+G  ++IAPVY AE+SP   RGF TSFPE+FIN GILLGYVSNY FS L +H+SWR+ML +G +PSV +
Sbjct:   18 AVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRK-YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFI 227          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  235 NLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKV---SDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVL 759
            N Y  G  + A +  +  GYD GV+SGA LYIKDD +V   S    E ++ +  + ++IG+ A G  +D+ GR+   +                 +   L+ GR + G+GVG A V APVY AE SP+  RG L S   + I GG  L Y+ N  F+++P   +WR MLG+  +P+V+
Sbjct:   28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVP--GTWRWMLGVSGVPAVI 203          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.236e-21
Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 1
Query:  160 ESNNNTDPQ-NQKTLADFDPQKKPKRNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLK--VSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSV 756
            E  N TDPQ N+    + +  +  K + +    + +A ++ +  GYD GV+SGA   +  DL   +S  + E++    +  +LI +  +G  +DW+GR+  ++                 N A ++ GRF+ G G+G   +I P+Y  EL+PA  RG L     VFI GG L+ Y  N  F    +H  WR+M GIGA P++
Sbjct:   52 EEANATDPQANEVADENGEGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEH--VHQGWRIMFGIGAAPAL 251          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  232 RNLYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKI---EILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGIGAIPSVL 759
            +N Y    A  A +  +  GYD GV+SGA LYI+DD K  D      E+++ +    +++G+   G  +D +GRR  I+                 N + L+ GR   G+GVG A + AP+Y +E SPA  RG L S     I GG  L Y+ N  F+ +    +WR MLGI  IP++L
Sbjct:   24 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVT--GTWRWMLGIAGIPALL 200          
BLAST of CB293990 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.043e-20
Identity = 57/186 (30.65%), Postives = 99/186 (53.23%), Query Frame = 1
Query:  190 QKTLADFDPQKKPKRN---LYASGAAILASMTSI*LGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALVIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLSWRMMLGI 738
            Q+  +D  PQ  P++     +   ++++A+++ + +GY++G++SGA L ++  L+++  + EI++  L I +L+ SL  G   D  GRR TI+                 +Y  L+ GR   G+ +  + +   VY AELSP   RG L S  E+ I  GILL Y+ NY F+   ++  W+ M G+
Sbjct:   13 QQRSSDDHPQTNPRQTGCGAFIILSSVIAAISGLLVGYELGIISGALLQLQSLLELTCQQQEIVVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVVSYGSLIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYICNYLFAS--VNNGWKYMFGL 196          
The following BLAST results are available for this feature:
BLAST of CB293990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
PLT1_ARATH1.140e-6766.16Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT5_ARATH4.334e-6771.58Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH4.792e-6668.62Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT3_ARATH1.768e-5259.22Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT6_ARATH6.951e-4953.44Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT4_ARATH1.110e-4645.50Probable polyol transporter 4 OS=Arabidopsis thali... [more]
INT1_ARATH2.252e-2335.96Probable inositol transporter 1 OS=Arabidopsis tha... [more]
ITR2_SCHPO1.236e-2131.68Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
INT2_ARATH4.695e-2135.20Probable inositol transporter 2 OS=Arabidopsis tha... [more]
GTR12_XENLA3.043e-2030.65Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ad01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ad01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293990 ID=CB293990; Name=CB293990; organism=Citrus sinensis; type=EST; length=764bp
GCACGTGTGGCTTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTC
TATCTCTTCTTCCAAACCCTAGCTTACATAATTAAACACTCGCAGTCTCT
CTCTCTCTCGCTCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAGGC
TTGGGAACCGAGAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCT
TGCGGATTTTGATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCG
GCGCTGCCATTTTGGCTTCCATGACTTCAATCTGACTAGGTTATGACATT
GGAGTAATGAGTGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTCAG
TGACACAAAAATCGAGATCTTAATGGGAATCTTGAATATTTACTCACTCA
TCGGCTCACTGGCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTAC
ACTATCGTGTTAGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGG
GTTCGCCACAAACTACGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTA
TCGGCGTCGGATACGCTCTCGTGATCGCTCCCGTTTACACAGCTGAACTT
TCTCCGGCTTCTACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCAT
TAACGGCGGGATATTACTTGGCTACGTCTCGAACTACGGATTCTCCAAAC
TACCCCTCCACTTAAGCTGGCGCATGATGCTCGGAATCGGCGCCATTCCG
TCGGTGCTTCTCGC
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