CB293997

Overview
NameCB293997
Unique NameCB293997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.286e-41
Identity = 85/114 (74.56%), Postives = 94/114 (82.46%), Query Frame = -1
Query:  534 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEMAL 875
            FHRIIPSFMIQ           GESI+G+ FADEN KLKHTGPGVLSMAN+G DTNGSQFFITTV TSWLDGRHVVFGKV+ GMDVV  IEAEG+Q+G PKSKVVI++SGE+ L
Sbjct:   88 FHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.899e-41
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = -1
Query:  534 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEMAL 878
            SFHRIIPSFM+Q           GESI+GE FADEN KLKHTGPG LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV++GMDVV  +EAEG Q+G PKSKVVI +SGE+ L
Sbjct:   90 SFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGELPL 204          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.587e-34
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEM 875
            FHRIIP+FMIQ           GESI+G+ F DEN K+KH+ PG+LSMANAGP+TNGSQFFITTV+TSWLDGRH VFG+V+ GMD+V+ +E+ G Q+G P     ISNSGE+
Sbjct:   86 FHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = -1
Query:  540 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEM 878
            SFHR+IP FM+Q           G+SI+G  F DEN  LKHTGPG LSMANAGP+TNGSQFFITT+  SWLDG+HVVFG+V  GMDVV+ IE+ G   G P++K++I N G++
Sbjct:   52 SFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEM 875
            FHRIIP FMIQ           GESI+GE F DEN K KHTGPGVLSMANAGP+TNGSQFF+ TV T+WLDG+HVVFG+V+ G+D+V  +E  G  +G PKS+ +I++ G++
Sbjct:   60 FHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEM 875
            FHRIIP+FMIQ           GESI+GE F DEN K KHTGPGVLSMANAGP+TNGSQFF+ TV T WLDG+HVVFG+V+ G+DVV+ +E+ G Q+G+P    +I++ G++
Sbjct:   60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.666e-33
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEM 875
            FHRIIP FMIQ           GESI GE F DEN K KHTGPGVLSMAN G +TNGSQFF+ TV T+WLDG+HVVFGKV+ GMDVV+ IE++G + G P +  VI++ GEM
Sbjct:   60 FHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.485e-32
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  543 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGE 878
            SFHRIIP FM Q           G+SI+G+ F DEN  LKHTGPG+LSMAN+GP+TNGSQFF+T   T WLDG+HVVFG++  G+DV+R IEA+G + G+PK KV+IS+ GE
Sbjct:  188 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGE-PKSKVVISNSGEM 875
            FHR+I  FMIQ           G+SI+GE FADEN KL+HTGPG+LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV+ GMDVV  IE      G+ P + V+I++ GE+
Sbjct:   79 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.533e-32
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  543 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGE 878
            SFHRIIP FM Q           G+SI+G+ F DEN  LKHTGPG+LSMAN+GP+TNGSQFF+T   T WLDG+HVVFG+V  G+DV+R IEA+G + G+PK KV+I++ GE
Sbjct:  188 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
The following BLAST results are available for this feature:
BLAST of CB293997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CP19D_ARATH2.286e-4174.56Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CP20A_ARATH3.899e-4173.91Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_DICDI1.587e-3462.50Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIA1_RHIOR2.992e-3359.29Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYP7_CAEEL2.992e-3359.82Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL2.992e-3359.82Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CYP2_CAEEL6.666e-3362.50Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIE_BOVIN1.485e-3259.82Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIB_ORPSP1.939e-3262.83Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIE_HUMAN2.533e-3259.82Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293997 ID=CB293997; Name=CB293997; organism=Citrus sinensis; type=EST; length=878bp
TGATCATGAGATTACTCAGATATTAACTCTTCATATAAGCTCGATATCTC
ACTCCAAGAATCTCTCTCTCACTCGTCACTTATCTATCCTTTTGCTGACC
TTTGAGTAACCTTTTAGCCACACAGAACAAGCCCGGGGTGGTCTTCTTAG
CTAACAGATTTAACAGCCAAAAGGGCCCATGCCAGCTCAGCATGCCACCT
CATTCACGTTTTAACAGAATATAACTACTTCTTGGTTTCGCATGCCATGA
AACCAAGACCATTATATGAGTAGGAGTAACTGGTTCTTACAAGCAAATGC
AGGCAATTCCACTATAAACAATGAAAAATAATGAAACGCAAACTATTCTA
GGAATAACGGAGCTATTACCAAGCTCGAATCTGTTAAAGACCATTGCAAA
TTGCAATAAGGAATTATAGTTGTTTTTCTACAGACCATATACCAACCCGA
ATGGATGTGGAACCAAACAGATAGCACAAATATAGGACAAGTTATCAATT
TCCATATAAAAATTTAATAAGGATGGTCTGTCACAAAGCCATTTCACCAC
TGTTAGATATAACAACTTTACTTTTGGGCTCCCCAGTCTGCCTTCCTTCC
GCTTCAATTGTGCGGACAACGTCCATCCCAGAGAGCACTTTGCCAAACAC
AACATGGCGGCCATCCAACCAGCTAGTTATGACAGTCGTAATGAAGAACT
GTGACCCATTGGTGTCTGGCCCAGCATTTGCCATCGACAGAACTCCTGGA
CCAGTGTGCTTCAGTTTACAGTTCTCATCAGCAAAACTTTCCCCAAATAT
TGACTCTCCACCACGCCCATCACCAAGAGTAAAATCACCGCCCTGGATCA
TAAAGCTTGGAATAATCCTGTGAAATGA
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