CB293999

Overview
NameCB293999
Unique NameCB293999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293999_ssr72 microsatellite CB293999_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293999_ssr327 microsatellite CB293999_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.043e-70
Identity = 126/144 (87.50%), Postives = 133/144 (92.36%), Query Frame = 1
Query:  427 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSERRPLYH 858
            F+EFS ADL+AATNNFSSD IVSESGEKAPN+VYKGRLQ    NRRWIAVKKFTK AWP+PKQFA+EAWGVGKLRH RLANLIGYCCDGDERLLVAE+MPNDTLAKHLFHWENQTIEWAMRLRV  YIAEALDYCS+E RPLYH
Sbjct:   58 FSEFSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQ----NRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYH 197          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.023e-46
Identity = 87/144 (60.42%), Postives = 119/144 (82.64%), Query Frame = 1
Query:  427 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSERRPLYH 858
            F EFS+  +R AT+ F+++ IVSE GE+APNVVYKG+L+    N+R IAVK+F + +WPD +QF +EA  VG+LR+ R+ANL+G C + +ERLL+AE+MPN+TLAKHLFHWE+Q ++WAMRLRVAL+IA+AL+YC+S+ R LYH
Sbjct:   41 FREFSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLE----NQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYH 180          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.090e-38
Identity = 77/135 (57.04%), Postives = 104/135 (77.04%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSS 837
            +FS + L+ ATN+FS + IVS+   +  +VV+KGRLQ+G     ++A+K+F   AW DPK F +EA  VGKLRHKRL NLIGYCCDGD+R LVA++M NDTLAK LF  + QT++W++RLRVA ++AEALDYC++
Sbjct:   37 KFSFSALKTATNHFSPENIVSD---QTSDVVFKGRLQNGG----FVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQRKYQTMDWSIRLRVAYFVAEALDYCNT 164          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.786e-20
Identity = 58/135 (42.96%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  439 SLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKH--AWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIE---WAMRLRVALYIAEALDY 828
            S+  LR+ TNNFSSD I+   G     VVYKG L DG      IAVK+      A     +F  E   + K+RH+ L  L+GYC DG+E+LLV EYMP  TL++HLF W  + ++   W  RL +AL +A  ++Y
Sbjct:  577 SIQVLRSVTNNFSSDNILGSGGF---GVVYKGELHDGTK----IAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEY 704          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            +F+LA++RAAT NF     +   G      VY+G L+DG      IA+K+ T H+     +F  E   + +LRH+ L +LIG+C + +E +LV EYM N TL  HLF      + W  RL   +  A  L Y
Sbjct:  507 KFTLAEIRAATKNFDDGLAIGVGGF---GKVYRGELEDGT----LIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFGSNLPPLSWKQRLEACIGSARGLHY 631          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHW--ENQTIEWAMRLRVALYIAEALDYCSSERRP 849
            F+  +L AAT NF  D  + E G      VYKGRL   +   + +AVK+  ++     ++F  E   +  L H  L NLIGYC DGD+RLLV E+MP  +L  HL     + + ++W MR+++A   A+ L++   +  P
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGR---VYKGRL---DSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANP 207          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGN------DNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH--WENQTIEWAMRLRVALYIAEALDYC-SSERRPLY 855
            FS A+L++AT NF  D ++ E G      V+KG + + +           IAVKK  +  W   +++  E   +G+  H+ L  LIGYC + + RLLV E+MP  +L  HLF      Q + W +RL+VAL  A+ L +  SSE R +Y
Sbjct:   56 FSFAELKSATRNFRPDSVLGEGGF---GCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRVIY 201          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT---IEWAMRLRVALYIAEALDY 828
            FS+ ++++ATN+F    I+   G  +   VYKGR+  G      +AVK+    +    K+F  E   + KLRH  L +LIGYC D +E +LV EYMP+ TL  HLF  +  +   + W  RL + +  A  L Y
Sbjct:  513 FSIYEIKSATNDFEEKLIIGVGGFGS---VYKGRIDGG---ATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQY 640          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQ---DGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCD----GDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            FS  +L  AT  FS   ++ E G     +VYKG++    D +D    +A+KK  +      KQ+  E   +G + H  +  LIGYC +    G ERLLV EYM N +L  HLF   + T+ W  RL + L  AE L Y
Sbjct:   74 FSYEELSKATYVFSRKLVIGEGGF---GIVYKGKILSNGDSSDPPLVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTY 208          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 49/139 (35.25%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRW------IAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWEN--QTIEWAMRLRVALYIAEALDY 828
            F+ A+L+AAT NF  D ++ E G  +   V+KG + +             IAVKK  +  W   +++  E   +G+  H  L  LIGYC + + RLLV E+MP  +L  HLF   +  Q + W +RL+VAL  A+ L +
Sbjct:   57 FTFAELKAATRNFRPDSVLGEGGFGS---VFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAF 192          
The following BLAST results are available for this feature:
BLAST of CB293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
Y4523_ARATH5.043e-7087.50Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH1.023e-4660.42Probable serine/threonine-protein kinase At5g41260... [more]
SSP_ARATH5.090e-3857.04Probable inactive receptor-like kinase SSP OS=Arab... [more]
TMK1_ARATH4.786e-2042.96Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y1357_ARATH1.882e-1637.12Probable receptor-like protein kinase At1g30570 OS... [more]
PBS1_ARATH2.458e-1635.71Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
APK1A_ARATH3.210e-1636.24Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
Y5389_ARATH4.636e-1536.57Probable receptor-like protein kinase At5g38990 OS... [more]
Y5707_ARATH6.054e-1536.96Probable receptor-like protein kinase At5g47070 OS... [more]
APK1B_ARATH7.907e-1535.25Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293999 ID=CB293999; Name=CB293999; organism=Citrus sinensis; type=EST; length=859bp
GCCCATTGAAAAAACCAAAAAAAAAAAAATGAAAAGAAAAAGAACCCTAG
TGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTTCACACTCA
CCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCTCTCGATAA
GAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAGCTAATATT
ATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGA
GTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGA
CACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCG
CAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCG
CTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGAC
CTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAG
CGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAA
ATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGG
CCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAG
GCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGA
GATTGCTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTA
TTTCACTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGC
TCTGTATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAAGACGTCCAT
TATACCATG
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