CB304858

Overview
NameCB304858
Unique NameCB304858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304858_ssr53 microsatellite CB304858_ssr53:53..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8643 contig Csv1_Contig8643:601..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304858 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.364e-40
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = -3
Query:  311 IERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 598
            IERRLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A GSL+LV I++PIVK+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQL+
Sbjct:  140 IERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235          
BLAST of CB304858 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.915e-32
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = -3
Query:  311 IERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 598
            IERRLMEKIP++ AVE V D+ETGLELNEEN+EKVL EIRPYL G  GG L+ + I  PIVKVR+TGPAA V TVR+AV++KLREKIP+I  VQLL
Sbjct:  130 IERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 225          
BLAST of CB304858 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3
Query:  311 IERRLMEKIPEIVAVESVADEETG-LELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 598
            IE RL +KIPEI++VE   + ETG LELN+ENIEKVL E+RPYL G  GG LELV ID  +VKVR+TGPAAGVMTVRVA+TQKLRE IP+I AVQLL
Sbjct:  139 IESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235          
The following BLAST results are available for this feature:
BLAST of CB304858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NIFU2_ARATH8.364e-4086.46NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ4.915e-3271.88NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH2.065e-3072.16NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304858 ID=CB304858|Name=CB304858|organism=Citrus sinensis|type=EST|length=600bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAGTTACCATTATTATT
ACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT
TATTATTATTATTATTATTACAGAAATAATGAAAATATTATTGTAATAAT
AATTATTATTGTTATTATCATAATTGCACTGTACAAAGTGTTACTACTCC
TATAGATATCGACATTACAGAAGTTGAACTGCTGCAATGGCTGGGATTTT
TTCACGCAACTTTTGGGTAACAGCCACACGAATAGTCATGACCCCAGCTG
CTCGACATTACAGAAGTTGAACTGCTGCAATGGCTGGGATTTTTTCACGC
AACTTTTGGGTAACAGCCACACGAACAGTCATGACTCCAGCTGCCGGACC
CGTAATTCGAACTTTAACTATTGGCTCATCAATTGCCACAAGTTCAAGTG
ATCCACCTGCTGCCCCAACAAGATAGGGCCTGATTTCCTCAAGTACCTTC
TCTATATTTTCTTCATTCAGCTCAAGCCCAGTTTCTTCATCTGCTACCGA
TTCCACTGCAACTATCTCGGGGATCTTCTCCATTAAGCGACGCTCAATAC
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