CB304944

Overview
NameCB304944
Unique NameCB304944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB304944 vs. ExPASy Swiss-Prot
Match: PR40A_MOUSE (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 48/134 (35.82%), Postives = 65/134 (48.51%), Query Frame = -2 
Query:   38 LTPMTSVSSSVGDAV----TVNTDTETKNYSSNLSAFNXXXXXXXXXXXXXXEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 427
            + P   V+S V  AV    TV   TE +   +N +A                  +++ V+      E EE    ++   +  K EAK AFK LL+   V S+ SW+QAM+ IIND RY AL  L E+KQAFN Y
Sbjct:  308 VAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSGDISSNTGEEPA-KQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 440
The following BLAST results are available for this feature:
BLAST of CB304944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PR40A_MOUSE3.454e-1135.82Pre-mRNA-processing factor 40 homolog A OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304944 ID=CB304944; Name=CB304944; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCCCAGGTACTCGTTAAAA
GCTTGCTTCCGTTCTCCAAGTGTTTTTAGAGCACCATATCTTCTGTCATT
AATTATTGCTTGCATTGCCTGATCCCAACTCCAGTCAGACCCAACATTTG
CAGACTCCAAAAGTGCTTTGAAGGCATTTTTAGCCTCCAGCTTATTAGCA
TATGCTAAATGCTCCTGCCCAACTGTCTTCTCTTCCAATTCATCACCTAT
TTTTTCACCTGTGACAGCATCTTTCCGCATTTCCTCTGTCTCTTGTGCAG
GGACTTCAACTGCGGCAGCAACAACATTAAAAGCTGACAAGTTGCTTGAA
TAATTCTTTGTTTCCGTATCCGTATTGACAGTTACAGCATCTCCTACACT
TGAAGATACAGAAGTCATTGGTGTAAGAGCATCTACAGTTGTCTGGATTC
CATCTGCACTCACTGCCACAGACGAAGCAATGACAGGTGAGGCTGAAGAT
GCAGAGACCATTGCAGGTTGTATACTGCTGGCAGCAATTATAGGAACCAC
TGAAACTGGGCTTGATGCTACCACTTGAACTGTT
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