CB304959

Overview
NameCB304959
Unique NameCB304959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10366 contig Csv1_Contig10366:889..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 7.880e-51
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = -1
Query:  241 MVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQ 591
            M CTVE VDDV++AIDHIH++GSAHTDCIV  D KVAETFL +VDSAAVFHNASTRF DGARFGLGAEVGIST RIHARGPVGVEGLLTTRWILRG G VV+GD+ VVYTHK+L LQ
Sbjct:  600 MACTVEFVDDVQSAIDHIHRYGSAHTDCIVTTDDKVAETFLRRVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTRWILRGRGQVVNGDKDVVYTHKSLPLQ 716          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.029e-50
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = -1
Query:  250 CTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 585
            CTVEIV+DV  AIDHIHQHGSAHTDCIV ED +VAE FL QVDSAAVFHNASTRF DG RFGLGAEVGISTSRIHARGPVGVEGLLTTRWI+RG G VVDGD G+VYTHK+L
Sbjct:  602 CTVEIVEDVYGAIDHIHQHGSAHTDCIVTEDSEVAEIFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWIMRGKGQVVDGDNGIVYTHKDL 713          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.344e-50
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = -1
Query:  244 CTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLAL 585
            CTVEIVDDV AAI+HI+ HGSAHTDCI+AED KVAETFL  VDSAAV HNASTRFCDG RFGLGAEVGISTSRIHARGPVGVEGLLTTRW+L+G+G VV GD+GVVYTHK+L L
Sbjct:  601 CTVEIVDDVYAAIEHINHHGSAHTDCIIAEDHKVAETFLQLVDSAAVLHNASTRFCDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWVLKGSGQVVHGDKGVVYTHKDLPL 714          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = -1
Query:  238 CTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQS 585
            CTVE+V+DV  AIDHIH+HGSAHTDCIV ED +VAE FL QVDSAAVFHNASTRF DG RFGLGAEVG+ST RIHARGPVGVEGLLTTRWI+RG G VVDGD G+VYTH+++ +Q+
Sbjct:  602 CTVEVVEDVYGAIDHIHRHGSAHTDCIVTEDHEVAELFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGVSTGRIHARGPVGVEGLLTTRWIMRGKGQVVDGDNGIVYTHQDIPIQA 717          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = -1
Query:  250 MVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 591
            + CT+EIVDDV AAIDHIH+HGSAHTD I+ ED +VAE FL QVDS++V HNASTRF DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI RG+G VVDGD+G+VYTHK+L
Sbjct:  600 LACTIEIVDDVYAAIDHIHRHGSAHTDSIITEDHEVAEIFLRQVDSSSVLHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIARGSGQVVDGDKGIVYTHKDL 713          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.258e-48
Identity = 90/117 (76.92%), Postives = 103/117 (88.03%), Query Frame = -1
Query:  241 MVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQ 591
            + CTVE+V+DV AAIDHIHQHGSAHTD I+ EDQ+VAE FL QVDSAAVFHNASTRF DG RFGLGAEVGIST RIHARGPVGVEGLLTT+W+ RG+G +VDGD+ +VY+HK+L  Q
Sbjct:  600 LACTVEVVEDVYAAIDHIHQHGSAHTDSIITEDQEVAEVFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLARGSGQIVDGDKSIVYSHKDLTQQ 716          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_MOUSE (Delta-1-pyrroline-5-carboxylate synthetase OS=Mus musculus GN=Aldh18a1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.458e-37
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = -1
Query:  250 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNL 588
            VC +E+VD V+ AIDHIH++GS+HTD IV E++K AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL
Sbjct:  673 VC-IEVVDSVQEAIDHIHKYGSSHTDVIVTENEKTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGQDHVVSDFSEHGSLKYLHENL 787          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_HUMAN (Delta-1-pyrroline-5-carboxylate synthetase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.458e-37
Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = -1
Query:  244 VEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNLAL 579
            +E+VD+V+ AIDHIH++GS+HTD IV ED+  AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL +
Sbjct:  675 IEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 789          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: P5CS_PONAB (Delta-1-pyrroline-5-carboxylate synthetase OS=Pongo abelii GN=ALDH18A1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = -1
Query:  244 VEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNLAL 579
            +E+VD+V+ AIDHIH++GS+HTD IV E++  AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL +
Sbjct:  675 IEVVDNVQDAIDHIHKYGSSHTDVIVTENENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 789          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: ALH13_CAEEL (Probable delta-1-pyrroline-5-carboxylate synthetase OS=Caenorhabditis elegans GN=alh-13 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = -1
Query:  250 CTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQG--VVYTHKNL 585
            CT+E+VD+V  A+ HI ++GS HT+ I+ E+   AE FL  VDSA  FHNASTRF DG RFGLGAEVGIST RIHARGPVGVEGLLTT+W+LRG GH+V+  +     Y H+NL
Sbjct:  667 CTLEVVDNVEEAVAHIIRYGSGHTESIITENTNTAEHFLKHVDSACAFHNASTRFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLLRGEGHLVEDFKNGKYSYLHENL 780          
The following BLAST results are available for this feature:
BLAST of CB304959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
P5CS_ORYSJ7.880e-5182.91Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS2_ARATH1.029e-5085.71Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_MESCR1.344e-5084.21Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS1_ARATH1.138e-4978.45Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_ACTDE3.311e-4980.70Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS_SOLLC1.258e-4876.92Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_MOUSE8.458e-3768.10Delta-1-pyrroline-5-carboxylate synthetase OS=Mus ... [more]
P5CS_HUMAN8.458e-3766.96Delta-1-pyrroline-5-carboxylate synthetase OS=Homo... [more]
P5CS_PONAB3.214e-3666.09Delta-1-pyrroline-5-carboxylate synthetase OS=Pong... [more]
ALH13_CAEEL2.083e-3563.16Probable delta-1-pyrroline-5-carboxylate synthetas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304959 ID=CB304959; Name=CB304959; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTCAAATTCTGAACTT
CATTATTGACTTGAGGAAACTTTCTATTACATGAGGCTCTACCCCAAGCA
AGATCCAAGTAATAAAACTAAAGATCTTAATAAATAACATCAGCAAAGTG
CAATAAATATACACCAAGTAAATAGAGTCTCAGAAGCAGCTACCATAATA
TTATACAAATGACATGGTTTAGAACCATAAGTTACTAGGATTGCAAGGCA
AGATTCTTGTGGGTATAGACGACTCCTTGATCACCATCTACGACGTGTCC
ATTCCCTCTCAATATCCATCGAGTAGTTAGCAATCCTTCAACTCCGACTG
GACCACGAGCATGAATCCTGCTTGTGCTTATTCCAACCTCTGCACCAAGT
CCAAATCGTGCTCCATCACAGAATCGTGTACTTGCATTATGAAATACTGC
AGCACTGTCAACTTGACATAAAAATGTTTCAGCAACTTTTTGATCTTCTG
CAACAATGCAATCAGTATGGGCACTTCCATGTTGATGAATATGGTCAATA
GCAGCACGCACATCGTCCACAATTTCAACCGTACAAACCAT
back to top