CB322105

Overview
NameCB322105
Unique NameCB322105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5862 contig Csv1_Contig5862:725..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322105 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.246e-46
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            +DIILRQH+AKQGCLLVRQSFFHN+P NF D+GGGV+GCRGFHSSFR TQ GLSLNIDVSTTMI++PGPVVDFL+ANQ V  P  IDWAKAKR LKNLRIKT  +N E
Sbjct:  206 IDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRALKNLRIKTSPANTE 313          
BLAST of CB322105 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDIILRQH+AKQGCLLVRQSFFHN+P NF D+GGGV+GCRGFHSSFR TQ GLSLNIDVSTTMI++PGPV+DFL+ANQ V  P  IDW KAKR LKNLRI+T   N E
Sbjct:  213 LDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSE 320          
BLAST of CB322105 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.561e-38
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDI+LRQ  AK+GCLLVRQSFF +D +N  D+ GGV GCRG HSSFRTT GGLSLN+DVSTTMI+ PGPV DFL+ NQNVRD   IDW +AK+ LKNLR+K I +N E
Sbjct:  186 LDIVLRQQQAKRGCLLVRQSFFSDDFRNLVDLTGGVSGCRGLHSSFRTTIGGLSLNMDVSTTMIVTPGPVFDFLLTNQNVRDIRDIDWPRAKKMLKNLRVKAIHNNME 293          
BLAST of CB322105 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.209e-25
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVG---GG--VLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDI LRQH+AK          + +    +   G   GG   + CRGFHSSFR T  GLSLN+DVSTTMI++PGPV++FL+ NQN+++P  IDW KAK  LKNLRIKT  +  E
Sbjct:  191 LDITLRQHSAKHARDTASCPSYPSAMDGWMKTGVPKGGREKISCRGFHSSFRPTDSGLSLNVDVSTTMIVRPGPVIEFLLFNQNIKNPHEIDWGKAKCALKNLRIKTTHTGSE 303          
The following BLAST results are available for this feature:
BLAST of CB322105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AGO4A_ORYSJ7.246e-4679.63Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ1.367e-4477.78Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ5.561e-3869.44Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ9.209e-2552.21Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
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Properties
Property NameValue
Genbank descriptionEST0214 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB067 similar to argonaute-like protein (acc# NP_565633), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322105 ID=CB322105; Name=CB322105; organism=Citrus sinensis; type=EST; length=325bp
ACTGGATATTATATTACGGCAGCATGCTGCAAAACAGGGCTGTCTCCTAG
TTCGCCAATCGTTCTTTCACAATGATCCAAAAAATTTTGCTGATGTCGGA
GGGGGAGTTCTTGGCTGCAGAGGATTCCATTCAAGTTTTAGGACCACTCA
GGGAGGCTTGTCTTTGAATATTGATGTATCAACTACCATGATAATTCAGC
CGGGTCCAGTAGTTGATTTTCTTATTGCCAACCAAAATGTTAGAGATCCC
TTTTCAATTGACTGGGCCAAGGCTAAACGGACACTAAAAAATCTGAGGAT
TAAGACGATTACCTCCAATCAAGAG
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