CB322162

Overview
NameCB322162
Unique NameCB322162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA5_ARATH (Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 7.194e-74
Identity = 140/237 (59.07%), Postives = 171/237 (72.15%), Query Frame = -2
Query:    3 SKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQT-DSTITVDTQNLTEDEVYLKDTLSXXXXXXXXXXXXXXXXREHSLK 710
            SK+ P +L EAKK AS+++ + NSWAYL KS+        +A+D  FELTLK++LKEWLLE+V+E   T EYD  G GVIHLCA+LGYTW+ILLFSW+ +SLDFRDK GWTALHWAAYYGREKMV  LLSAGA+PNLVTDPT +  GG  AAD+A +KG+DGLAAFL+E+ LVAQF DM  AGNISG+L+T  +  + +  N  E+E  LKDTL+                REH LK
Sbjct:  504 SKISPENLLEAKKLASRTSHLLNSWAYLMKSIQANEVPFDQARDHLFELTLKNRLKEWLLEKVIENRNTKEYDSKGLGVIHLCAVLGYTWSILLFSWANISLDFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTKEFLGGCTAADLAQQKGYDGLAAFLAEKCLVAQFKDMQTAGNISGNLETIKAEKSSNPGNANEEEQSLKDTLAAYRTAAEAAARIQGAFREHELK 740          
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA6_ARATH (Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.959e-71
Identity = 130/214 (60.75%), Postives = 163/214 (76.17%), Query Frame = -2
Query:   69 SKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTDSTITVDTQNLTEDEVYLKDTLS 710
            SK+ P++L++AKK ASK+  + NSWAYL KS+   + S  +AKD  FEL+LK++LKEWL+E+V+EG  T +YD  G GVIHLCA LGYTW++ LFS SGLSL+FRDK GWTALHWAAYYGREKMV  LLSAGA+PNLVTD T  N GG  AAD+A + G+DGLAA+L+E+ LVAQF DM +AGNI+G L+      ++   L EDE  LKD L+
Sbjct:  418 SKISPHNLRDAKKLASKTNHLLNSWAYLVKSIQGNKVSFDQAKDHLFELSLKNRLKEWLMEKVLEGRNTLDYDSKGLGVIHLCASLGYTWSVQLFSLSGLSLNFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDSTKDNLGGCMAADLAQQNGYDGLAAYLAEKCLVAQFRDMKIAGNITGDLEACKAEMLNQGTLPEDEQSLKDALA 631          
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA4_ARATH (Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 79/210 (37.62%), Postives = 111/210 (52.86%), Query Frame = -2
Query:   69 KFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA----GNISGSLQTDST---ITVDTQNLTEDEVYLKDTLS 674
            K  +K     + W ++  ++ D   S     D   +  LK KL  WL  R   E   T       QG+IH+ A LG+ WA       G+++DFRD  GW+ALHWAA +G EKMV  L+++GA    VTDP+ Q+P G  AA IA+  G  GLA +LSE AL    + +TL        +  +QT+ T   I+  + +  ED+V LKDTL+
Sbjct:  584 KLLTKLKADDDQWRHVIGTIIDGSASSTSTVDWLLQELLKDKLDTWLSSRSCDEDYITCSLSKQEQGIIHMVAGLGFEWAFYPILAHGVNVDFRDIKGWSALHWAAQFGSEKMVAALIASGASAGAVTDPSRQDPNGKTAASIAASNGHKGLAGYLSEVALTNHLSSLTLEETENSKDTAQVQTEKTLNSISEQSPSGNEDQVSLKDTLA 793          
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = -2
Query:  168 KDSFFELTLKSKLKEWLLERVVEGSK-TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL 584
            K++  +  LK  L  WLL+++ EG K  +  D  GQGV+H  A LGY WA+     +G+S+DFRD  GWTALHWAA++GRE+++  L++ GA P  +TDP    P G   +D+A   G  G+A +LSE AL A  + ++L
Sbjct:  628 KNNLLQEFLKESLHSWLLQKIAEGGKGPSVLDEGGQGVLHFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRERIIGSLIALGAAPGTLTDPNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSL 767          
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = -2
Query:  114 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEY-DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTDSTITVDT 590
            EAK+       + KL  WL+ +V E  K     D  GQGV+HL A LGY WAI     +G+S++FRD  GW+ALHWAA+ GRE  V  L+S GA    + DP+ ++P G  AAD+A   G  G++ FL+E +L +    +T+    + S  +     V T
Sbjct:  626 EAKERLIREEFEDKLYLWLIHKVTEEGKGPNILDEDGQGVLHLAAALGYDWAIKPILAAGVSINFRDANGWSALHWAAFSGREDTVAVLVSLGADAGALADPSPEHPLGKTAADLAYGNGHRGISGFLAESSLTSYLEKLTVDAKENSSADSSGAKAVLT 785          
BLAST of CB322162 vs. ExPASy Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = -2
Query:  168 EAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEY-DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL 683
            + ++  SK   +     YL      + ++  E K   F    + +L  WL+ +V E  K     D  GQG++H  A LGY WAI     +G++++FRD  GW+ALHWAA+ GRE+ V  L+S GA    +TDP+ + P G  AAD+A   G  G++ FL+E +L +    +T+
Sbjct:  546 DKRRQISKIMLLKEEKEYLLPGTYQRDSTKQEPKGQLFRELFEEELYIWLIHKVTEEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSALHWAAFSGREETVAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTV 718          
The following BLAST results are available for this feature:
BLAST of CB322162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CMTA5_ARATH7.194e-7459.07Calmodulin-binding transcription activator 5 OS=Ar... [more]
CMTA6_ARATH1.959e-7160.75Calmodulin-binding transcription activator 6 OS=Ar... [more]
CMTA4_ARATH1.678e-3037.62Calmodulin-binding transcription activator 4 OS=Ar... [more]
CMTA3_ARATH3.499e-2843.57Calmodulin-binding transcription activator 3 OS=Ar... [more]
CMTA2_ARATH9.528e-2639.38Calmodulin-binding transcription activator 2 OS=Ar... [more]
CMTA1_ARATH2.123e-2535.26Calmodulin-binding transcription activator 1 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionEST0280 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB200 similar to transcription factor-like protein (acc# AAM91103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322162 ID=CB322162; Name=CB322162; organism=Citrus sinensis; type=EST; length=711bp
ACTTTTAGAGAGTGCTCCCTGAATGCAGCCTGAATTCGCGCTGCAGCTTC
AGCAGCTGTCCGGTAAGCTGACAAAGTATCTTTTAGATACACCTCATCCT
CAGTGAGGTTCTGTGTGTCTACTGTAATGGTTGAGTCTGTTTGCAGTGAG
CCACTAATATTGCCAGCTAAGGTCATGTCATTGAATTGTGCTACTAGAGC
CTGTTCTGAAAGAAAAGCCGCTAGGCCGTCAAAACCCTTCTTAGATGCAA
TATCTGCAGCATTCAATCCTCCAGGATTTTGTGACGTGGGGTCTGTGACC
AAGTTTGGCTTTGCTCCTGCTGATAAAAGATCTACGACCATTTTCTCCCT
TCCATAATATGCAGCCCAATGAAGAGCCGTCCATCCATATTTATCTCGAA
AATCTAACGACAAGCCTGACCATGAAAATAAAAGAATAGCCCATGTGTAT
CCAAGCATAGCACACAAATGTATTACTCCTTGACCATGAACATCGTATTC
AGTGGTCTTACTGCCTTCAACTACTCTTTCCAGCAGCCATTCCTTCAATT
TACTCTTCAAAGTGAGTTCAAAGAAACTGTCTTTTGCTTCTGGCAATGAA
GTTCTTTTGTCTCCAACAGACTTAAATAAATACGCCCAACTATTGGATAT
ACAAGTGGATTTCGAGGCAAACTTCTTAGCTTCCTTCAGGGAATTTGGCG
GCACTTTACTG
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