CB322205

Overview
NameCB322205
Unique NameCB322205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 50/120 (41.67%), Postives = 87/120 (72.50%), Query Frame = 3
Query:  114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEEDK 473
            +  +HPSS+N  L+ +   +L++ EKV+ +KVFLR+TT++SPF +LLFGG I VQH+   +T+D W+   AP +IAV+FKELR+ + S+L+Q + NP+ S    ++++ ++I+ L++ ++
Sbjct: 1247 KAQVHPSSVNRDLQIYG--WLLYQEKVKYSKVFLRETTLISPFPVLLFGGDIAVQHRERLLTVDDWIHFQAPVKIAVIFKELRILIESVLKQKLENPKMS--LKDDMILNIIKELIKTER 1362          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 48/119 (40.34%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEED 470
            +  +HPSS+N  L++  H +L++ EK+   +V+LR+TT+++PF +LLFGG I VQH+   ++IDGW+   AP +IAV+FK+LR+ + S+LR+ + NP+ S + N+++++ + +L+  E+
Sbjct: 1253 KAQVHPSSVNRDLQT--HGWLLYQEKIRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMS-LENDKILQIITELIKTEN 1368          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 47/119 (39.50%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEED 470
            +  +HPSS+N  L+++   +L++ EKV   +V+LR+TT+++PF +LLFGG I VQH+   +++DGW+   AP +IAV+FK+LR+ + S+LR+ + NP+ S + N+++++ + +L+  E+
Sbjct: 1249 KAQVHPSSVNRDLQTYG--WLLYQEKVRYTRVYLRETTLITPFPVLLFGGDIEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMS-LENDKILQIITELIKTEN 1364          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 47/101 (46.53%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLF-GGSINVQHQTGQVTI---DGWLK-VTAPAQIAVLFKELRLTLHSILRQMIRNP 404
            VHIHPSS+N Q++ F+ P+L++ EK++T++VF+RD ++VS + ++LF GG +NVQ Q G+  +   DGW++ V A  Q+A L KELR  L  +L+  I+NP
Sbjct: 1262 VHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNP 1362          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLF-GGSINVQHQTGQVTI---DGWLK-VTAPAQIAVLFKELRLTLHSILRQMIRNP 404
            VHIHPSS+N Q++ F+ P+L++ EK++T++VF+RD ++VS + ++LF GG +NVQ Q G   +   DGW++ V A  Q+A L KELR  L  +L+  I+NP
Sbjct: 1264 VHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNP 1364          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 45/126 (35.71%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTI--DGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQ----NSTIANN-EVVKSMIQLLLEEDK 473
            V +HP S+N +   F + +L++  K+ T+ ++L D T VSP+ +L FGG I++Q    Q TI  D W+   +PA+IA L KELR  L  +L++ I +P     N T + +  V+ ++I L+  ++K
Sbjct:  867 VAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVLSAIIDLIKTQEK 992          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQ--VTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNP 404
            V IHP S+N +   F + +L++  K+ T+ ++L D T VSP+ +L FGG I++Q    Q  + +D W+   +P +IA L K LR  L S+L++ I +P
Sbjct:  860 VSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESP 957          
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3
Query:   96 WYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVET-----NKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTI-----------DGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNS-TIANNEVVKSMIQLLLEED 470
            ++D    V +HPSS     K FE  +L    K  T     +KV+LRD T V  F++LLFGG + + H  G + I           + W+++ A A+I VL  +LR  L ++L   I  PQ+   +   + V S+I  +L+ D
Sbjct: 1422 YFDRNGRVFLHPSSTLFSCKGFESSYLTTFAKSSTGAGADSKVYLRDATEVPLFALLLFGGKLKINHFAGGIGIGSNQSGGDAKDENWVRLRANARIGVLCAQLRRLLDAVLDHAIDEPQDMFAVPGCKDVLSVIGQVLQRD 1563          
The following BLAST results are available for this feature:
BLAST of CB322205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DHX29_XENLA6.493e-2341.67ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
DHX29_HUMAN8.481e-2340.34ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX29_MOUSE1.889e-2239.50ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX57_HUMAN2.553e-1946.53Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX57_MOUSE5.688e-1946.53Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX36_HUMAN1.110e-1435.71Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX36_MOUSE2.094e-1337.76Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
YUM14_USTMA1.960e-1132.39Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
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Properties
Property NameValue
Genbank descriptionEST0329 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB342 similar to hypothetical protein (acc# AAO42847), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322205 ID=CB322205; Name=CB322205; organism=Citrus sinensis; type=EST; length=572bp
ACCCTAATGTGGCTGCCACTGAGCAAGGAGTTGCTGGAGCTGCTCTTAGC
AACCTTAGAAAGTCCTCTAATTCCGCAGCGAAGGCTCATCCAGTCTGGTA
TGATGGAAGAAGAGAGGTTCACATACACCCTTCTTCAATAAACAGTCAGT
TGAAATCATTCGAGCATCCATTCCTAGTCTTCCTGGAAAAGGTTGAAACC
AATAAAGTATTTCTGCGAGATACTACCATTGTCTCTCCATTCTCTATTTT
GTTGTTCGGAGGTTCCATTAACGTTCAGCATCAGACCGGACAGGTCACAA
TAGATGGTTGGTTAAAGGTGACGGCACCTGCCCAAATTGCTGTCTTGTTT
AAGGAACTACGATTAACTCTTCATTCTATTTTGAGACAAATGATTAGAAA
CCCACAGAATTCAACCATTGCAAATAATGAGGTTGTCAAGTCTATGATCC
AGTTGTTGTTAGAAGAAGACAAACCCCAAAAATAATTTATGGACACCAAG
GAGATGAGCGCGTCTCTGTCAGCTTATGGTGGGTATGCAAAAACTGAGCA
AATTACTCAATCAGAGTTAAAG
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