CB322208

Overview
NameCB322208
Unique NameCB322208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.842e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 200
            SF+GKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FTI+YLVKPRRLGDPSYLSWNRNPGG
Sbjct:  283 SFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.245e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 200
            SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FT++YLVKPRRLGDP+YLSWNR PGG
Sbjct:  284 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.395e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 200
            SF+GKKKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA+SF+++YL KPR+LGDPSYLSWNR+ GG
Sbjct:  286 SFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 351          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.279e-26
Identity = 52/66 (78.79%), Postives = 62/66 (93.94%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 200
            SF+G+KKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA++F ++YLVKPR+LGDPSYLSWNR+ GG
Sbjct:  283 SFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: YNI7_SCHPO (Uncharacterized protein C11B10.07c OS=Schizosaccharomyces pombe GN=SPBC11B10.07c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 3
Query:    6 FSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 188
            + G K ++ STTS +GGKN FLGI Y  +GGLC    +  +I  L+KPRR+GDP YLSWNR
Sbjct:  307 YKGTKTIMFSTTSVIGGKNYFLGILYFVIGGLCAASGVILSIACLIKPRRVGDPRYLSWNR 367          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.373e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 188
            SFSG+KKL+LST++WLGG+NDFLGI YL VG     +++ F +++L  PR  GD    SWN+
Sbjct:  280 SFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLKNPRPYGDN---SWNK 338          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: MUG89_SCHPO (Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe GN=mug89 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.342e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWN 185
            SF G K LVL+T S LGGKN FLGIAY+ V  +C  L   FT+ + ++PR+L D  YL+W+
Sbjct:  322 SFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKLADHRYLNWD 382          
BLAST of CB322208 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.589e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    3 SFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 137
            SF G+K+++LST SW+GGKN FLGIAY+TVG +CFFL +   I++
Sbjct:  314 SFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLGVVLLIIH 358          
The following BLAST results are available for this feature:
BLAST of CB322208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ALIS3_ARATH3.842e-3192.42ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH7.245e-3089.39ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH4.395e-2780.30Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS5_ARATH1.279e-2678.79ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
YNI7_SCHPO4.267e-1455.74Uncharacterized protein C11B10.07c OS=Schizosaccha... [more]
ALIS2_ARATH1.373e-1253.23Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
MUG89_SCHPO2.342e-1252.46Meiotically up-regulated gene 89 protein OS=Schizo... [more]
CC50A_CHICK2.589e-1160.00Cell cycle control protein 50A OS=Gallus gallus GN... [more]
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Properties
Property NameValue
Genbank descriptionEST0332 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB345 similar to membrane protein (acc# NP_564656), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322208 ID=CB322208; Name=CB322208; organism=Citrus sinensis; type=EST; length=269bp
ACAGTTTTAGTGGCAAGAAGAAGCTTGTTCTTTCAACCACTAGCTGGCTT
GGTGGAAAGAACGACTTCCTTGGCATTGCTTATCTCACCGTTGGAGGCTT
GTGCTTCTTTTTGGCCCTGTCATTCACTATAGTATATCTGGTAAAGCCAA
GGCGACTTGGAGATCCTTCCTACCTGTCATGGAACAGAAATCCAGGAGGG
CACTAAGCAAATTTCTGGAACCTGAGTAGATGGATTGGCTATCTCAAAAG
TGGTTGATGTAATTTTGTG
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