CB322210

Overview
NameCB322210
Unique NameCB322210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11812 contig Csv1_Contig11812:91..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322210 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.878e-26
Identity = 57/86 (66.28%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    4 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAW 258
            MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAW
Sbjct:    1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAW 86          
BLAST of CB322210 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.412e-26
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    4 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAW 258
            MA+ +SP ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAW
Sbjct:    1 MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAW 84          
BLAST of CB322210 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.694e-24
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    4 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAW 258
            MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAW
Sbjct:    1 MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAW 83          
BLAST of CB322210 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.813e-19
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   22 PMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAW 258
            PMASQ+  S       +   PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AW
Sbjct:    8 PMASQVMKS-----GLACSKPRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAW 76          
The following BLAST results are available for this feature:
BLAST of CB322210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAL_ARATH2.878e-2666.28Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_CUCSA6.412e-2664.71Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL2.694e-2465.12Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU5.813e-1959.49Photosystem I reaction center subunit XI, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionEST0334 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB347 similar to photosystem I chain XI precursor (acc# AAL16216), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322210 ID=CB322210; Name=CB322210; organism=Citrus sinensis; type=EST; length=258bp
CAAATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAGAGTAGCTT
TACTTCACCAGTTTCCAGGAGCCTGCTTACCCCAAGGGGTATCTCTGGAT
CTCCATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCCTTGTCAAA
GCTATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGG
TGATCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGA
TTGCATGG
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