CB417318

Overview
NameCB417318
Unique NameCB417318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB417318 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:    3 LATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPKGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXXKDNIKRLSSFDK 266
            L+TTR +PRL++               + +RNLL KG FAAQMIDLGLP +VQ+LKAQAW+               KDN+K+LSSF+K
Sbjct:  248 LSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLKDNLKKLSSFEK 335
[Close]
BLAST of CB417318 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 3 
Query:    3 LATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPKGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXXKDNIKRLSSFDK 266
            LAT+RT+ RL +               L  RNLLPKG F AQM+DLGLP ++ SLK QAWS               KD IK+LSSFDK
Sbjct:  237 LATSRTMQRLTEVVKHSTKEKVVRVVILTFRNLLPKGTFGAQMVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDK 324
The following BLAST results are available for this feature:
BLAST of CB417318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATH_ORYSJ5.058e-1546.59Probable V-type proton ATPase subunit H OS=Oryza s... [more]
VATH_ARATH2.510e-1446.59V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionEST0394 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P039 similar to vacuolar H( )-ATPase subunit H (acc# BAC57732), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417318 ID=CB417318; Name=CB417318; organism=Citrus sinensis; type=EST; length=266bp
ACTTGGCAACTACTAGAACCCTGCCACGACTAATAGATGTTGTTAAGAGT
TCCACAAAGGAGAAGGTTGTCAGGGTGGTGGTCTTGATCCTTAGGAACTT
GCTTCCCAAAGGTAATTTTGCTGCTCAGATGATAGACCTTGGACTACCTC
AAGTTGTTCAAAGTTTAAAAGCACAAGCATGGAGTGATGAGGATTTACTA
GAGGGTCTGAATCAACTGGAAGAAGGTTTGAAGGATAATATTAAGAGATT
GAGTTCTTTCGACAAG
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