CB417324

Overview
NameCB417324
Unique NameCB417324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417324 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.134e-45
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCREFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            +DIILRQH+AKQGCLLVRQSFFHN+P NF D+GGGV+GCR FHSSFR TQ GLSLNIDVSTTMI++PGPVVDFL+ANQ V  P  IDWAKAKR LKNLRIKT  +N E
Sbjct:  206 IDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRALKNLRIKTSPANTE 313          
BLAST of CB417324 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.157e-43
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCREFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDIILRQH+AKQGCLLVRQSFFHN+P NF D+GGGV+GCR FHSSFR TQ GLSLNIDVSTTMI++PGPV+DFL+ANQ V  P  IDW KAKR LKNLRI+T   N E
Sbjct:  213 LDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSE 320          
BLAST of CB417324 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.708e-37
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCREFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDI+LRQ  AK+GCLLVRQSFF +D +N  D+ GGV GCR  HSSFRTT GGLSLN+DVSTTMI+ PGPV DFL+ NQNVRD   IDW +AK+ LKNLR+K I +N E
Sbjct:  186 LDIVLRQQQAKRGCLLVRQSFFSDDFRNLVDLTGGVSGCRGLHSSFRTTIGGLSLNMDVSTTMIVTPGPVFDFLLTNQNVRDIRDIDWPRAKKMLKNLRVKAIHNNME 293          
BLAST of CB417324 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 2
Query:    2 LDIILRQHAAKQGCLLVRQSFFHNDPKNFADVG---GG--VLGCREFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQE 325
            LDI LRQH+AK          + +    +   G   GG   + CR FHSSFR T  GLSLN+DVSTTMI++PGPV++FL+ NQN+++P  IDW KAK  LKNLRIKT  +  E
Sbjct:  191 LDITLRQHSAKHARDTASCPSYPSAMDGWMKTGVPKGGREKISCRGFHSSFRPTDSGLSLNVDVSTTMIVRPGPVIEFLLFNQNIKNPHEIDWGKAKCALKNLRIKTTHTGSE 303          
The following BLAST results are available for this feature:
BLAST of CB417324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AGO4A_ORYSJ6.134e-4578.70Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ1.157e-4376.85Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ4.708e-3768.52Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ7.796e-2451.33Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
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Properties
Property NameValue
Genbank descriptionEST0401 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P071 similar to putative argonaute AGO1 protein (acc# AAK93710), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417324 ID=CB417324; Name=CB417324; organism=Citrus sinensis; type=EST; length=325bp
ACTGGATATTATATTACGGCAGCATGCTGCAAAACAGGGCTGTCTCCTAG
TTCGCCAATCGTTCTTTCACAATGATCCAAAAAATTTTGCTGATGTCGGA
GGGGGAGTTCTTGGCTGCAGAGAATTCCATTCAAGTTTTAGGACCACTCA
GGGAGGCTTGTCTTTGAATATTGATGTATCAACTACCATGATAATTCAGC
CGGGTCCAGTAGTTGATTTTCTAATTGCCAACCAAAATGTTAGAGATCCC
TTTTCAATTGACTGGGCCAAGGCTAAACGGACACTAAAAAATCTGAGGAT
TAAGACGATTACCTCCAATCAAGAG
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