CB417377

Overview
NameCB417377
Unique NameCB417377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417377 vs. ExPASy Swiss-Prot
Match: Y3684_ARATH (Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.069e-51
Identity = 108/221 (48.87%), Postives = 143/221 (64.71%), Query Frame = 3
Query:   30 LSMATIPASCIFSADLSAIYRRDKTSSFGERRRNPVLKRVAVTTEQTSSNSGTAVTTSGRSFVQEKAQRSSEAEAETSLRRVN----VEGDWEESRKSLKDYFDEAKDMIRSDGGPPRWFSPLECGAHSPDSPLLLYLPGIDGVGLGLIMQHQRVGQIFDVWCLHIPVKDRTSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPDIDL 680
            +++  +P+    SA  S+   R  TS+     R   +K V  T+   + +SG          VQ + + + E  A  +    N    VE    + +K L D+ +EA++ +   GGPPRWFSPLECGA + +SPLLLYLPGIDG GLGLI  H+++G+IFD+WCLHIPV DRT    LVKL+E TV+SEN+RLPNRPIYLVGES+GACLAL VAA+NP+IDL
Sbjct:    1 MAVTVLPSVSGLSAVASSSNLRRLTSA--SNHRLTAIKSVTSTSSPPTPSSG----------VQRRRKNNDENRATVAKVVENPYSKVEAARPDLQKRLSDFLEEAREFVGDGGGPPRWFSPLECGAQATNSPLLLYLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPVKDLVKLIEETVKSENFRLPNRPIYLVGESIGACLALDVAARNPNIDL 209          
BLAST of CB417377 vs. ExPASy Swiss-Prot
Match: Y1457_ARATH (Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.647e-41
Identity = 82/181 (45.30%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  150 AVTTEQTSSNSGTAVTTSGRSFVQEKAQRSSEAEAETSLRRVNVEGD--WEES--RKSLKDYFDEAKDMIRSDGGPPRWFSPLECGAHSPDSPLLLYLPGIDGVGLGLIMQHQRVGQIFDVWCLHIPVKDRTSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPDIDL 680
            A + E  ++N   +++T+ ++   +K       + ++  + V+ E +  W++    KS+KDYF  AK+++++DGGPPRWFSP++CG    D+P LL+LPG+DG G+GL+  H+ +G+ F V CLHIPV DRT F GL+K+VE  +R E    PN+PIYLVG+S G CLALAVAA+N  +DL
Sbjct:   37 ATSLEPVNNNGSVSLSTTVQN---QKGANEVNGKGKSKRKIVSDEIELLWDDGYGSKSVKDYFAAAKEILKADGGPPRWFSPVDCGRPVEDAPTLLFLPGMDGTGMGLVPHHKALGKAFHVSCLHIPVLDRTPFEGLLKVVEDVLRQEQATRPNKPIYLVGDSFGGCLALAVAARNRSLDL 214          
The following BLAST results are available for this feature:
BLAST of CB417377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3684_ARATH2.069e-5148.87Acyltransferase-like protein At3g26840, chloroplas... [more]
Y1457_ARATH5.647e-4145.30Acyltransferase-like protein At1g54570, chloroplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0464 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P171 similar to unknown Arabidopsis protein (acc# NP_198929), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417377 ID=CB417377; Name=CB417377; organism=Citrus sinensis; type=EST; length=681bp
TTCTTGTTCCCGCTGCTTACTCGCTTCAACTCTCCATGGCGACGATCCCA
GCTAGCTGTATTTTCTCCGCCGATTTATCGGCAATATATCGTCGAGACAA
GACGTCGTCGTTCGGAGAACGGAGGCGGAACCCGGTTTTGAAGAGAGTAG
CTGTGACGACGGAGCAGACGTCAAGCAACAGCGGAACGGCAGTCACGACG
TCGGGGAGGAGTTTTGTGCAGGAGAAGGCTCAGAGGAGTAGTGAAGCAGA
AGCCGAGACGTCGTTGCGGAGGGTCAACGTCGAAGGAGATTGGGAAGAGA
GCAGAAAGAGTTTGAAAGATTACTTTGACGAAGCCAAGGATATGATCAGA
TCAGACGGTGGTCCGCCTCGCTGGTTCTCTCCGTTGGAGTGCGGGGCCCA
CTCTCCCGATTCTCCTCTCCTTCTATATCTACCTGGGATTGATGGAGTTG
GACTTGGACTTATAATGCAGCATCAAAGAGTTGGACAGATTTTTGATGTA
TGGTGCTTGCATATTCCAGTCAAGGATCGAACATCATTTACAGGGCTAGT
GAAGCTGGTTGAAAGAACAGTCAGATCAGAGAATTATCGTTTGCCTAATA
GACCCATATATCTTGTTGGAGAGTCTCTTGGAGCATGCCTTGCACTAGCC
GTTGCAGCTCAGAATCCTGATATTGACCTTG
back to top