CB417386

Overview
NameCB417386
Unique NameCB417386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13722 contig Csv1_Contig13722:27..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.067e-66
Identity = 125/141 (88.65%), Postives = 138/141 (97.87%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRN+VIIMTSNLGAEHLL+G+ GKVTM+VARD V++EVRKHFRPELLNRLDEIVVFDPLSH+QLRKVARLQMKDVA+RLAERGVALAVTDAALD +LAESYDP+YGARPIRRW+EKKVVTELS+M+VREEIDENSTVYI
Sbjct:  708 VDFRNSVIIMTSNLGAEHLLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTDAALDYILAESYDPVYGARPIRRWMEKKVVTELSKMVVREEIDENSTVYI 848          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.703e-64
Identity = 119/141 (84.40%), Postives = 137/141 (97.16%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNTVIIMTSNLGAEHLL+GM+GK +M+VARD V+QEVR+HFRPELLNRLDEIV+FDPLSHEQLRKVARLQMKDVA+RLAERGVALAVTDAALD++L+ SYDP+YGARPIRRW+EK+VVT+LS+ML++EEIDEN TVYI
Sbjct:  709 VDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYI 849          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.719e-32
Identity = 66/142 (46.48%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNTVIIMTSN+G+EHLL G   +  ++  AR  V+ E+R HFRPE LNR+D+IV+F PL   Q+ ++  LQ  ++  RLAER + + +TDA  +++  + YDP+YGARP+RR++  +V T + R L+R ++ + +TV +
Sbjct:  715 VDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDAGREVIAHQGYDPVYGARPLRRYISHEVETLVGRALLRGDVQDGATVRV 856          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 63/141 (44.68%), Postives = 100/141 (70.92%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+AA D +    YDP++GARP+RR +++++ T L++ ++  E+ E   V +
Sbjct:  697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQV 837          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 63/141 (44.68%), Postives = 100/141 (70.92%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+AA D +    YDP++GARP+RR +++++ T L++ ++  E+ E   V +
Sbjct:  697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQV 837          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  107 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIS 532
            VDF NT+I+MTSNLG+EHLL+      + +V R+ VL  VR +FRPEL+NRLD+IVVF  L  E LR V    +  V  RL   G ++ + D   D +L   +D   GARP+RRW+EK +VTE+ RML+ +E+  NST+ +S
Sbjct:  705 VDFSNTIIVMTSNLGSEHLLNPEETNESYEVLRENVLAAVRSYFRPELINRLDDIVVFRRLRTEDLRGVVDNLIAGVNERLKSSGFSVLLDDGVKDFILEHGHDANMGARPLRRWIEKNIVTEIGRMLIAKELPPNSTLRVS 846          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.744e-30
Identity = 60/141 (42.55%), Postives = 99/141 (70.21%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNTVII+TSN+G+  +  G+    + +  R++V   +++HFRPE LNRLDEIVVF PL+ EQ+  + ++Q++ V  RLAER + L ++  ALD +    YDP++GARP++R +++++ T LSR ++  E+ + + +Y+
Sbjct:  697 VDFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVADGAHLYV 837          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 62/142 (43.66%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMM-GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDFRNT+IIMTSN+G+ ++L G+  G   +   R++V++E+R+HFRPE LNR+DE V+F PL   Q+ ++  L +  +  RLAER + + + D A D +   +YDP+YGARP+RR+L+  + T L+R L+  E+ + +TV +
Sbjct:  712 VDFRNTIIIMTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRDGTTVEV 853          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 60/141 (42.55%), Postives = 96/141 (68.09%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDF+NT+IIMTSN+G+ +LL    G+      R+ V+ E++  F+PE LNR+D+I++F PLS E ++K+  + ++DV  RL ER + L VTD A +I+  E YDP+YGARP++R++   + TE+++ ++  EI + S   I
Sbjct:  714 VDFKNTIIIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEIYDGSVALI 854          
BLAST of CB417386 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 62/142 (43.66%), Postives = 104/142 (73.24%), Query Frame = -3
Query:  110 VDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYI 532
            VDF+NTVIIMTSN+G+ HLL G+    ++ + +RD V+ ++R HFRPE LNR+DEI++F PL+  +++ +    +K++  RLA+R + + +TDAA + V+   +DP+YGARP++R+++++V T+L+R L+   I +NS V +
Sbjct:  713 VDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVV 854          
The following BLAST results are available for this feature:
BLAST of CB417386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
HS101_ARATH1.067e-6688.65Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
HS101_ORYSJ1.703e-6484.40Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB2_STRAW1.719e-3246.48Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_THET83.242e-3144.68Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET23.242e-3144.68Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLP_TRYBB9.432e-3147.89Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_MEIRU2.744e-3042.55Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_DESVH7.984e-3043.66Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_CLOPE7.984e-3042.55Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_BACCR7.984e-3043.66Chaperone protein clpB OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionEST0474 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P183 similar to heat shock protein 101 (acc# AAA67927), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417386 ID=CB417386; Name=CB417386; organism=Citrus sinensis; type=EST; length=534bp
ACAGAAGAAATATAAGTTTCTTAGTCCAGGTCCTTCATGTATGTAACCTA
ACTAGACACATTGAACTCCTAACATGGTGCTAATTATAGTAGAAACATAA
CTAGAAAGAGATGTACACTGTTGAGTTCTCGTCAATTTCTTCGCGAACAA
GCATTCTTGATAGCTCAGTCACTACCTTTTTCTCCAGCCATCGCCGAATA
GGCCTTGCACCATAAATCGGGTCATAACTCTCGGCTAATACAATATCTAA
CGCAGCATCAGTTACTGCCAATGCTACACCCCTCTCAGCAAGACGAATTG
CAACATCCTTCATTTGCAGCCTTGCCACCTTCCTTAGTTGTTCGTGTGAG
AGAGGATCAAACACAACAATCTCATCAAGACGGTTCAACAGCTCTGGCCT
AAAGTGCTTCCTCACCTCTTGCAGGACTTGATCACGTGCAACTTGCATTG
TGACCTTGCCCATCATTCCCGATAAGAGGTGCTCTGCTCCAAGGTTTGAG
GTCATGATAATAACTGTGTTTCTAAAGTCAACTG
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