CB417409
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24 Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 3 Query: 3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275 IKTEDPDLPAFY+DPLI+PI + + ++ F LPE VEP LKDT LYTD TA GI+LL+APRPFN+RSGR RRA DIPLV Sbjct: 340 IKTEDPDLPAFYFDPLINPISHRHSVKSQEPL---PDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLV 427
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24 Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 3 Query: 3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275 IKTEDPDLPAFY+DPLI+PI + + ++ F LPE VEP LKDT LYTD TA GI+LL+APRPFN+RSGR RRA DIPLV Sbjct: 340 IKTEDPDLPAFYFDPLINPISHRHSVKSQEPL---PDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLV 427
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.523e-23 Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 3 Query: 3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275 IKTEDPDLPAFYYDPLI+PI +N + E+ + LPE V P+ +D LYTD TA G++LL+APRPFN+RSGR RRA D+PLV Sbjct: 330 IKTEDPDLPAFYYDPLINPIVLSNLKATEENL-PEGEEEDEWELPEDVRPIFEDVPLYTDNTANGLALLWAPRPFNLRSGRTRRAVDVPLV 419
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.033e-16 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3 Query: 3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275 IK + PDLP FY+ ++PIPS + + F LPE++E +L T++ D A GI L +APRPF++RSG RRAEDIPLV Sbjct: 326 IKNDSPDLPGFYFGAALNPIPSYKTSGNKNEQSEYGTEDDEFQLPEEIETILSKTEIEHDNLANGIQLYWAPRPFSLRSGTTRRAEDIPLV 416
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.481e-11 Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 3 IKTEDPDLPAFYYDPLIHPIPS---TNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275 + EDPDLPAF++DP+I+PI S T E F +P +P + + TA+ + LL+AP PFN RSG +RA+D+PL+ Sbjct: 359 VPPEDPDLPAFFWDPIINPITSRQLTLHELDTSPEDSAIEEDPNFEIP--FDPFFHSEDIEFEHTASALILLWAPHPFNKRSGATKRAQDVPLI 450 The following BLAST results are available for this feature:
BLAST of CB417409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417409 ID=CB417409; Name=CB417409; organism=Citrus sinensis; type=EST; length=277bpback to top |