CB417418

Overview
NameCB417418
Unique NameCB417418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:128..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417418 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 71/149 (47.65%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   70 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 504
            MAS+LALKRL+S ++ PR+ R  + P+ +S  R FNTNAVR Y                                    TRS+SQVLN MDQ  E+P  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR
Sbjct:    1 MASALALKRLLSSSIAPRS-RSVLRPAVSS--RLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIR 144          
BLAST of CB417418 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 73/150 (48.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:   73 ASSLALKRLVSFNLI--PRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 504
            +S+LAL+RL+S + +  PRALR  V P A S SR FNTNA R Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR
Sbjct:    4 SSALALRRLLSSSTVAVPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIR 146          
BLAST of CB417418 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   70 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 504
            MASSLALKR +S  L+  +    + P A+SASR FNTNA+RQY                                     RSLSQVLN +D +T++P  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+
Sbjct:    1 MASSLALKRFLSSGLLSSSF---LRPVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIK 138          
BLAST of CB417418 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.861e-18
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  391 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR 549
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RR
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARR 164          

HSP 2 Score: 39.6614 bits (91), Expect = 1.861e-18
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   70 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQY 198
            MASSL  KR +S +L+ R+L   + P+A+++ R F+TNA+RQY
Sbjct:    1 MASSLIAKRFLSSSLLSRSL---LRPAASASHRSFDTNAMRQY 40          

HSP 3 Score: 25.7942 bits (55), Expect = 1.861e-18
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  285 CV*SIFTNKEPEPGPELHGSDDGE 356
            CV SIF++ E EPG E  G   G+
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQ 95          
BLAST of CB417418 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   76 SSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 504
            +S+AL+RL S NL+   +   +     S SR FNTNA                                        TRS+ Q++N MDQ+ E+PF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+
Sbjct:    2 ASMALRRLASRNLVSGGIFRPL-----SVSRSFNTNAQMGRVDHDHELDDRSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIK 142          
The following BLAST results are available for this feature:
BLAST of CB417418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HS23M_ARATH1.842e-2447.6523.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.842e-2448.6723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA1.320e-2245.52Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS22M_SOYBN1.861e-1856.60Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU4.394e-1836.99Small heat shock protein, chloroplastic OS=Chenopo... [more]
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Properties
Property NameValue
Genbank descriptionEST0519 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P317 similar to mitochondrial heat shock protein 22 kDa (acc# NP_199957), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417418 ID=CB417418; Name=CB417418; organism=Citrus sinensis; type=EST; length=549bp
CAGCCGCAGTCACAAAAGGTATTTTGAAATCTCTGCATTGTTTTGTGCTT
TCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGAGGCTTG
TTTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCGTCGCTCCTTCT
GCTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTTCGTCAATACGA
TGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCGCTCGCT
CTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTTTGATCCATTT
TCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGATCAGATGAC
GGAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCGCCGAGGCTGGG
ATGCTAAAGAAACCGATGACGCATTGAACCTCAGCATCGACATGCCAGGG
CTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAACACTCTGGTGAT
CAGAGGCGAGGGCGGAAAAGAAGGAGAGGGCGAAGAGAGCGTGCGTAGG
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