CB610501

Overview
NameCB610501
Unique NameCB610501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4061 contig Csv1_Contig4061:2..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610501 vs. ExPASy Swiss-Prot
Match: LANC2_MOUSE (LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 72/237 (30.38%), Postives = 107/237 (45.15%), Query Frame = 3
Query:   60 SSMADRFFPNEMPETSLAVAAHETTTAQDSLT-KLLSLPYTA------------VSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNGLKLCCDIVKACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDLYLTKFREIKLP-----SDLPNELLYGRVGFLWACSFLNKHIGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLM 704
            + M +R FPN  P+   A +A          T ++  LP T             V + +K     +K  +     G+      D + YTG  G A L  + Y+VT +   L    D VK     +    RVTF+CG AG  A+GAV+      E      +TK  ++        S+LP+ELLYGR G+L+A  +LN  IG  T+    ++ VV  II++G+ L+       RCPL+
Sbjct:   16 AEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTGDQTYLLRSLDYVKRT-LRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLL 251          
BLAST of CB610501 vs. ExPASy Swiss-Prot
Match: LANC2_HUMAN (LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 71/236 (30.08%), Postives = 112/236 (47.46%), Query Frame = 3
Query:   60 SSMADRFFPNEMPETSLAV-------AAHETTTAQD-SLTKLLSLPY----TAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNGLKLCCDIVKACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDLYLTKFREIKLP-----SDLPNELLYGRVGFLWACSFLNKHIGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLM 704
            + M +R F N  P+   A        AA ET   +  + T    LP+      + + ++     +K  +     G+      D + YTG  G A L  + Y+VT +   L    D VK     + +  RVTF+CG AG  A+GAV+      +      +TK  +++       SDLP+ELLYGR G+L+A  +LN  IG  T+  + ++ VV+ II++G+ L+       RCPL+
Sbjct:   17 AEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPGLPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRT-LRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLL 251          
BLAST of CB610501 vs. ExPASy Swiss-Prot
Match: LANC1_MOUSE (LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 64/219 (29.22%), Postives = 108/219 (49.32%), Query Frame = 3
Query:   66 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNGLKLCCDIVK-ACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDLYLTKFREI-KLPSDLPNELLYGRVGFLWACSFLNKHIGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLM 704
            MA R FPN   + + ++A +      DS  +L        S  L N    L Q +     G+     +D T YTG  G A L    + V  +   L++    VK + +  SR S  +TF+CG AG  A+ AVL      E+  +  +T+   + K+   +PNE+LYGR+G+++A  F+NK+ G++ I  + ++ + + I+ +G  L+ +     + PLM
Sbjct:    1 MAQRAFPNPYADYNKSLAENYF----DSTGRLTP----EFSHRLTNKIRELLQQMER---GLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRS--ITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLM 206          
BLAST of CB610501 vs. ExPASy Swiss-Prot
Match: LANC1_RAT (LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 61/209 (29.19%), Postives = 104/209 (49.76%), Query Frame = 3
Query:   66 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNGLKLCCDIVK-ACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDLYLTKFREI-KLPSDLPNELLYGRVGFLWACSFLNKHIGKDTISTAQMRAVVDEIIKAGRRLANR 686
            MA R FPN   + + ++A +      DS  +L        S  L N    L Q +     G+     QD T YTG  G A L    + V  +   L++    VK + +  SR S  +TF+CG AG  A+ AVL       +  +  +T+   + K+   +PNE+LYGR+G+++A  F+NK+ G++ I  + ++ + + I+ +G +L+ +
Sbjct:    1 MAQRAFPNPYADYNKSLAENYF----DSTGRLTP----EFSHRLTNKIRELLQQMER---GLKSADPQDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKHSLNCLSRRS--ITFLCGDAGPLAVAAVLYHKMNSGKQAEDCITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICETILTSGEKLSRK 196          
BLAST of CB610501 vs. ExPASy Swiss-Prot
Match: LANC1_HUMAN (LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 63/219 (28.77%), Postives = 104/219 (47.49%), Query Frame = 3
Query:   66 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNGLKLCCDIVK-ACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDLYLTKFREI-KLPSDLPNELLYGRVGFLWACSFLNKHIGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLM 704
            MA R FPN   + + ++A      A     +         S  L N    L Q +     G+     +D T YTG  G A L    Y V  +   L+L    VK + +  ++ S  +TF+CG AG  A+ AVL     +E+  +  +T+   + K+    PNE+LYGR+G+++A  F+NK+ G + I  + ++ + + I+ +G  LA +     + PLM
Sbjct:    1 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEF--------SQRLTNKIRELLQQMER---GLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRS--ITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLM 206          
The following BLAST results are available for this feature:
BLAST of CB610501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LANC2_MOUSE3.256e-1830.38LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1... [more]
LANC2_HUMAN2.756e-1730.08LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1... [more]
LANC1_MOUSE2.184e-1429.22LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1... [more]
LANC1_RAT8.298e-1429.19LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1... [more]
LANC1_HUMAN1.084e-1328.77LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610501 ID=CB610501; Name=CB610501; organism=Citrus sinensis; type=EST; length=709bp
GGGGGCACAAAGAAGGAATCATATAGCGCAAGAAGAAACAACCAATCTCT
ACGGAAGCATCAAGCATGGCTGATCGTTTCTTCCCAAATGAAATGCCAGA
AACATCACTTGCAGTTGCAGCTCATGAAACAACAACTGCCCAAGACTCTC
TCACCAAGCTCCTTTCTCTTCCGTACACAGCAGTTAGTGACACGCTCAAA
AACTCAGCTTTGGCTCTCAAACAAACAGTTGTGAATGAGACATGGGGAGT
GAGTGGAAAGCGTGTGCAAGATTACACTTTGTATACGGGTGCTCTCGGGA
CTGCTTACTTGCTGTTTAAAGCTTACCAAGTTACCAAGAATGACAATGGG
CTTAAGTTGTGTTGTGATATTGTCAAGGCCTGTGATTCTGCTTCGAGAGA
TTCTGGGCGTGTGACATTCATATGTGGGCGGGCTGGTGTTTGTGCTCTCG
GTGCTGTCCTGGCAAAGCATGCTGGTGATGAAAGGCTACTTGATCTCTAC
TTAACAAAGTTTAGAGAGATCAAACTCCCTAGTGATTTGCCAAATGAGTT
ATTATATGGGAGAGTGGGGTTTTTATGGGCCTGTTCATTCTTAAACAAGC
ATATTGGTAAAGACACAATATCTACTGCCCAAATGAGAGCAGTTGTGGAT
GAAATTATTAAGGCTGGTAGACGATTAGCTAACAGGGGAAGATGCCCATT
GATGAATGG
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