CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610526_ssr19 microsatellite CB610526_ssr19:19..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CB610526_ssr624 microsatellite CB610526_ssr624:624..635. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2370 contig Csv1_Contig2370:310..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.897e-40
Identity = 79/134 (58.96%), Postives = 102/134 (76.12%), Query Frame = 1
Query:  106 MGGILSNIFGAGGSDGQDSPHSESATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            MGG LS +FG+G  D   +      + V+ F SSARWQLHF+  K S++L+V+DF+ASWCGPC+++EP +  MA  ++DV FVK+DVDEL DVA+EF V AMPTFVLVK GKE+ER+IGA+KDEL KK+ K RA
Sbjct:    1 MGGALSTVFGSG-EDATAAGTESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA 133          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 53/105 (50.48%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            V++ H+   W   F   K S +L+V+DF ASWCGPC+++ P + ++A  +  V F K+DVD+L DVA+E++V+AMP+FV++K G+EVER++GARKDELL KI  H
Sbjct:    7 VIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  178 ATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRAQ 510
            A  V+S HS  +W +  +    + +L+V+DF ASWCGPC+IM P    +A  +    F+K+DVDEL  +A++F V+AMPTF+ +K G   +RV+GA K+EL  K+  H AQ
Sbjct:   17 AGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAAQ 127          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  157 DSPHSESATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            D+  SE    V   H    W  +F     + +L+V+DF ASWCGPC+ + P L  +A     V F+K+DVDEL  V+ E+ V+AMPTFV +K GKEV+RV+GA+K+EL + I KH A
Sbjct:    5 DATSSEEG-QVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAA 120          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 44/103 (42.72%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  184 NVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 492
            NV + HS+  W+        + +L+ +DF A+WCGPC+++ P   +++  + ++ F+K+DVDEL DVAQE+ V+AMPTF+ +K GK V++V+GA+KD+L +K+
Sbjct:    5 NVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            V++ H+   W         S +L+V+DF ASWC PC+ + P   +MA  +++V F KIDVDEL  VAQEF+V+AMPTFV +K G  ++RV+GA KDE+ +K+ KH
Sbjct:    7 VIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            V+  H    W +  D+ K S++L+V+DF ASWC PC+++ P    +A  + S   F K+DVDEL +VAQEF V+AMPTFVL+K G  V++V+GARK++L   I KH
Sbjct:    8 VIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  178 ATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            A  V++ H+   W     + K S++L+V+DF A WC PC+ + P   ++A  + DV F K+DVDEL+ VAQEF VQAMPTFV +KG +++++V+GA K+E+  K+ KH
Sbjct:   10 AGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  178 ATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            A  V++ H+   W     + K S++L+V+DF A WC PC+ + P   ++A  + DV F K+DVDEL+ VAQEF VQAMPTFV +KG +++++V+GA K+E+  K+ KH
Sbjct:   10 AGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            V+  H++  W +  D  K S++L+V+DF ASWC PC+++ P    +A  + S   F K+DVDEL  VA+EF V+AMPTFV +K G+ V++++GA K++L  KI KH
Sbjct:    8 VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXH2_ARATH1.897e-4058.96Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES1.842e-2750.48Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_WHEAT1.613e-2344.14Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH1_TOBAC1.613e-2346.15Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA2.107e-2342.72Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH6.130e-2347.62Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA1.046e-2248.11Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_BRAOL2.330e-2245.37Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA2.330e-2245.37Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH4_ARATH5.190e-2245.28Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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