CB610538

Overview
NameCB610538
Unique NameCB610538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:87..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.044e-44
Identity = 91/127 (71.65%), Postives = 96/127 (75.59%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS                     NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+LKF T G
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGG 127          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 87/130 (66.92%), Postives = 95/130 (73.08%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            MPIRNIAVG  +E  HP AL+AALAEFISTLIFVFAG+GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYWIAQLLGSTVAC LL+F T G  T
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLAT 130          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.021e-39
Identity = 81/130 (62.31%), Postives = 91/130 (70.00%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            MPI  IA+G  +E  HP AL+AA AEFISTLIFVFAG+GSGMAF+KLT  G  TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYW+AQLLGSTVAC LL+F T G  T
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQAT 130          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.557e-39
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 443
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAVTFGAFVGGNI+LLRGI+Y IAQLLGS VA  LL FVT
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVT 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 81/132 (61.36%), Postives = 91/132 (68.94%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTTSA 464
            MP+  IAVG P E +HPD  +AA+AEFISTLIFVFAG GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNISLL+ ++YW+AQLLGS VACLLLK  T G    A
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGA 132          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 84/133 (63.16%), Postives = 91/133 (68.42%), Query Frame = 3
Query:   69 MPIRNIAVGHPREAT-HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTTSA 464
            MP RNIA+G  +E   HP+ALRAALAEFISTLIFVFAG GSG+AFNK+T NGA TPS                     NISGGHVNPAVTFG  +GGNI+LLRGILYWIAQLLGS  AC LL F T G    A
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPA 133          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 79/132 (59.85%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTTSA 464
            MP+  IAVG P E +HPD  +AA+AEFIS LIFVFAG GSGMAF+KLT  G  TPS                     NISGGHVNPAVTFGAFVGGNISL++ ++YW+AQLLGS VACLLLK  T G    A
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGA 132          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.469e-38
Identity = 79/132 (59.85%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTTSA 464
            MPI  IA+G P EA+ PDA+RAA AEF S +IFVFAG+GSGMA+ KLT +G  TP+                     N+SGGHVNPAVTFGAF+GGNI+LLR ILYWIAQLLG+ VACLLLK  T G  T+A
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAA 132          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.786e-36
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 443
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAV FGAFVGGNI+LLRGI+Y IAQLLGS V   LL FVT
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVT 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 65/129 (50.39%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   78 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            R    G   EATHPD++RA LAEF+ST +FVFAGEGS +A +KL      H G NTP                      N+SGGHVNPAVTF A +GG IS++R I YW+AQL+G+ +ACLLL+  TNG
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNG 135          
The following BLAST results are available for this feature:
BLAST of CB610538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TIP11_ARATH1.044e-4471.65Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ1.844e-4166.92Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE5.021e-3962.31Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP1_MEDTR6.557e-3967.20Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP12_MAIZE8.564e-3961.36Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP12_ARATH8.564e-3963.16Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_ORYSJ4.250e-3859.85Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH9.469e-3859.85Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP1_MEDSA1.786e-3665.60Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP32_ARATH4.260e-3050.39Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_F08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610538 ID=CB610538; Name=CB610538; organism=Citrus sinensis; type=EST; length=466bp
GGGGACACTTACGTGAACTAGTAGTAATCACACCCCAAAGGTTCAATCTG
ATTCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
ATACCACATCTGCTTT
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