CB610554

Overview
NameCB610554
Unique NameCB610554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10412 contig Csv1_Contig10412:12..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_DANRE (Transmembrane protein 111 OS=Danio rerio GN=tmem111 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.034e-36
Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 2
Query:   89 MAE-DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            MAE +L+ D+ IR WV++P+  +  L+G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N+E+G     K +         +DP+M  DMMK N++ ++P  L   W+N+ FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    1 MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLRENGKYIPKQSFLMRKFYFNNQEDGFFKKTKRKV--VPPSPMTDPSMLTDMMKGNVTNVLPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASWYFLNVFGLRSMYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_RAT (Transmembrane protein 111 OS=Rattus norvegicus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   98 DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +L+ D+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_PONAB (Transmembrane protein 111 OS=Pongo abelii GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   98 DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +L+ D+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_MOUSE (Transmembrane protein 111 OS=Mus musculus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   98 DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +L+ D+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_HUMAN (Transmembrane protein 111 OS=Homo sapiens GN=TMEM111 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   98 DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +L+ D+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_BOVIN (Transmembrane protein 111 OS=Bos taurus GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.701e-36
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   98 DLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +L+ D+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI              WYFLN+FGLR ++SLILG+
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPVTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 189          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: YNY3_SCHPO (UPF0347 membrane protein C1711.03 OS=Schizosaccharomyces pombe GN=SPBC1711.03 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.871e-32
Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 2
Query:   95 EDLVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKT-VKEGQVIVRARNLRAGANFISPKSFRARRVYFCN--EENGLLHVPKGQAQNAQAQMFSDPNMA--MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            + L+ D A+R+WVL+P+  VM+LIGILR+  + L++SS     K  ++E +++ RA  LRA +N + P+S  AR+ +     +    L      A  A   +  D  +   M+ MK N+ M++PQT+   W+N FFSGF+  K+PFPLT RF+S+ Q+G+              WYFLNLFGL+ +++L+LGE
Sbjct:    2 QKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYALRACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESMKGNMLMVVPQTIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDLDVQWVSSISWYFLNLFGLKSVYALLLGE 194          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: TM111_DICDI (Transmembrane protein 111 homolog OS=Dictyostelium discoideum GN=tmem111 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 74/201 (36.82%), Postives = 107/201 (53.23%), Query Frame = 2
Query:  101 LVPDTAIRDWVLIPLSVVMVLIGILRYFVSKLMR--SSQVPDPKTVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNE-----ENGLLH--VPKGQAQNAQAQMFS-----DPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIP-FPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLILGE 658
            +V D  IR+WV+IP+ +V+ ++  L+  +S++M+  S +  D +   + Q I R R L +  N I  KSF  R+ Y C         G+L    P  +  N    MF+     DP+   DM+K N+  +IPQ    +WVN FFSGFVA K+P FPLT RF++ LQ GI              WYFL  FG  G+ +++LGE
Sbjct:    6 IVLDVEIRNWVVIPILIVLFIVSALKLNISRIMQINSGKPQDVEKTMQMQTINRVRRLVSFYNRIPQKSFFIRKAYLCGTTGSKTNKGILSSIAPTQEDSNPMNMMFANSMFTDPSGITDMLKGNIMHLIPQVTMMSWVNHFFSGFVACKLPFFPLTIRFKTFLQRGIEMGSLDVSYVSSLSWYFLCWFGSEGINAILLGE 206          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS6 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 62/191 (32.46%), Postives = 103/191 (53.93%), Query Frame = 2
Query:  110 DTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKT---VKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLI 649
            D  ++ WVL+P+S+VMVL G+L+ ++  L+  S   + +    + E Q +  A+ L      +S  +F A++ +   +     H+ K + Q           F+DPNM+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI              WYF+++ GL  +++LI
Sbjct:    4 DDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194          
BLAST of CB610554 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS1 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 62/191 (32.46%), Postives = 103/191 (53.93%), Query Frame = 2
Query:  110 DTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKT---VKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIXXXXXXXXXXXXXXWYFLNLFGLRGLFSLI 649
            D  ++ WVL+P+S+VMVL G+L+ ++  L+  S   + +    + E Q +  A+ L      +S  +F A++ +   +     H+ K + Q           F+DPNM+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI              WYF+++ GL  +++LI
Sbjct:    4 DDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194          
The following BLAST results are available for this feature:
BLAST of CB610554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TM111_DANRE1.034e-3640.84Transmembrane protein 111 OS=Danio rerio GN=tmem11... [more]
TM111_RAT5.131e-3639.57Transmembrane protein 111 OS=Rattus norvegicus GN=... [more]
TM111_PONAB5.131e-3639.57Transmembrane protein 111 OS=Pongo abelii GN=TMEM1... [more]
TM111_MOUSE5.131e-3639.57Transmembrane protein 111 OS=Mus musculus GN=Tmem1... [more]
TM111_HUMAN5.131e-3639.57Transmembrane protein 111 OS=Homo sapiens GN=TMEM1... [more]
TM111_BOVIN6.701e-3639.57Transmembrane protein 111 OS=Bos taurus GN=TMEM111... [more]
YNY3_SCHPO5.871e-3238.34UPF0347 membrane protein C1711.03 OS=Schizosacchar... [more]
TM111_DICDI3.334e-2736.82Transmembrane protein 111 homolog OS=Dictyostelium... [more]
EMC3_YEAS64.075e-2532.46ER membrane protein complex subunit 3 OS=Saccharom... [more]
EMC3_YEAS14.075e-2532.46ER membrane protein complex subunit 3 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_E04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610554 ID=CB610554; Name=CB610554; organism=Citrus sinensis; type=EST; length=659bp
GGGGACCCCAAGATCACAACCACATAAACAAAAACGAAAAAAATCGAAAT
CGAGCACCCACAGGCACAGGCACAGGTACAGAGCATCAATGGCGGAAGAT
CTGGTGCCTGACACGGCGATCAGAGACTGGGTGCTGATACCGCTGTCAGT
TGTGATGGTGCTTATTGGAATTCTCCGTTACTTCGTCTCTAAGCTTATGC
GCTCCTCTCAAGTGCCCGATCCTAAAACCGTTAAAGAAGGACAAGTGATT
GTTAGGGCGCGGAATTTGCGTGCTGGCGCTAATTTTATCTCTCCAAAGTC
TTTTCGCGCTCGCAGAGTTTATTTCTGTAACGAGGAAAATGGATTGTTGC
ATGTGCCAAAGGGTCAGGCACAAAATGCGCAAGCGCAAATGTTTTCCGAT
CCTAACATGGCAATGGACATGATGAAGAAAAATCTTTCAATGATCATACC
CCAGACCCTTACTTTTGCTTGGGTCAACTTTTTCTTCTCTGGGTTTGTTG
CAGCCAAGATACCATTCCCACTGACTCAGAGGTTCAGGTCAATGTTACAA
AATGGGATTGACGATAGCACTGTTGATGTAAGCTATGTCAGTAGTCGTTC
ATGGTACTTCCTCAATTTGTTTGGACTGAGGGGTTTATTTAGCCTCATTC
TGGGGGAAA
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